about
Practical guidelines for the comprehensive analysis of ChIP-seq dataJASPAR 2016: a major expansion and update of the open-access database of transcription factor binding profilesDirect regulation of diurnal Drd3 expression and cocaine reward by NPAS2.Comprehensive mapping of the Escherichia coli flagellar regulatory networkDNA methylation restricts lineage-specific functions of transcription factor Gata4 during embryonic stem cell differentiationAltered mRNA Splicing, Chondrocyte Gene Expression and Abnormal Skeletal Development due to SF3B4 Mutations in Rodriguez Acrofacial DysostosisGenome-Scale Mapping of Escherichia coli σ54 Reveals Widespread, Conserved Intragenic BindingFgf and Esrrb integrate epigenetic and transcriptional networks that regulate self-renewal of trophoblast stem cells.JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profilesMuMoD: a Bayesian approach to detect multiple modes of protein-DNA binding from genome-wide ChIP dataA comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data.A survey of motif finding Web tools for detecting binding site motifs in ChIP-Seq data.Motif-based analysis of large nucleotide data sets using MEME-ChIP.Improving analysis of transcription factor binding sites within ChIP-Seq data based on topological motif enrichmentChIPseek, a web-based analysis tool for ChIP dataA protocol for RNA methylation differential analysis with MeRIP-Seq data and exomePeak R/Bioconductor package.A review of ensemble methods for de novo motif discovery in ChIP-Seq data.Identification of C2H2-ZF binding preferences from ChIP-seq data using RCADE.dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptomeKrüppel-like factors compete for promoters and enhancers to fine-tune transcription.Glucocorticoid receptor binds half sites as a monomer and regulates specific target genesNon-targeted transcription factors motifs are a systemic component of ChIP-seq datasets.Differential motif enrichment analysis of paired ChIP-seq experimentsCreating and validating cis-regulatory maps of tissue-specific gene expression regulationMassively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks.Transcription factor binding dynamics during human ES cell differentiationThe transcription factors SOX9 and SOX5/SOX6 cooperate genome-wide through super-enhancers to drive chondrogenesisInsulator function and topological domain border strength scale with architectural protein occupancy.G-quadruplex prediction in E. coli genome reveals a conserved putative G-quadruplex-Hairpin-Duplex switch.Cell context dependent p53 genome-wide binding patterns and enrichment at repeats.Genomic mapping of the MHC transactivator CIITA using an integrated ChIP-seq and genetical genomics approach.Binding site discovery from nucleic acid sequences by discriminative learning of hidden Markov models.Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune diseaseDivergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning.Characterization of the neural stem cell gene regulatory network identifies OLIG2 as a multifunctional regulator of self-renewalAmplification of pico-scale DNA mediated by bacterial carrier DNA for small-cell-number transcription factor ChIP-seq.The Groucho co-repressor is primarily recruited to local target sites in active chromatin to attenuate transcriptionZinc finger independent genome-wide binding of Sp2 potentiates recruitment of histone-fold protein Nf-y distinguishing it from Sp1 and Sp3.Comprehensive genome-wide transcription factor analysis reveals that a combination of high affinity and low affinity DNA binding is needed for human gene regulation.The MEME Suite.
P2860
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P2860
description
2012 nî lūn-bûn
@nan
2012年の論文
@ja
2012年学术文章
@wuu
2012年学术文章
@zh-cn
2012年学术文章
@zh-hans
2012年学术文章
@zh-my
2012年学术文章
@zh-sg
2012年學術文章
@yue
2012年學術文章
@zh
2012年學術文章
@zh-hant
name
Inferring direct DNA binding from ChIP-seq.
@ast
Inferring direct DNA binding from ChIP-seq.
@en
type
label
Inferring direct DNA binding from ChIP-seq.
@ast
Inferring direct DNA binding from ChIP-seq.
@en
prefLabel
Inferring direct DNA binding from ChIP-seq.
@ast
Inferring direct DNA binding from ChIP-seq.
@en
P2860
P356
P1476
Inferring direct DNA binding from ChIP-seq.
@en
P2860
P356
10.1093/NAR/GKS433
P407
P577
2012-05-18T00:00:00Z