SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions
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Classification of intrinsically disordered regions and proteinsExperimental detection of short regulatory motifs in eukaryotic proteins: tips for good practice as well as for badEvolution of domain-peptide interactions to coadapt specificity and affinity to functional diversityExhaustive search of linear information encoding protein-peptide recognitionMultiple mechanisms determine the order of APC/C substrate degradation in mitosis.QSLiMFinder: improved short linear motif prediction using specific query protein data.SLiMScape: a protein short linear motif analysis plugin for Cytoscape.MFSPSSMpred: identifying short disorder-to-order binding regions in disordered proteins based on contextual local evolutionary conservation.Intrinsic disorder mediates hepatitis C virus core-host cell protein interactions.Research resource: EPSLiM: ensemble predictor for short linear motifs in nuclear hormone receptors.Detecting functional divergence after gene duplication through evolutionary changes in posttranslational regulatory sequences.High-throughput methods for identification of protein-protein interactions involving short linear motifs.Predicting MoRFs in protein sequences using HMM profiles.The 5'-3' exoribonuclease Pacman (Xrn1) regulates expression of the heat shock protein Hsp67Bc and the microRNA miR-277-3p in Drosophila wing imaginal discs.Potential of known and short prokaryotic protein motifs as a basis for novel peptide-based antibacterial therapeutics: a computational survey.A CAF40-binding motif facilitates recruitment of the CCR4-NOT complex to mRNAs targeted by Drosophila Roquin.SLiMSearch: a framework for proteome-wide discovery and annotation of functional modules in intrinsically disordered regions.Methods for protein complex prediction and their contributions towards understanding the organisation, function and dynamics of complexes.ProViz-a web-based visualization tool to investigate the functional and evolutionary features of protein sequences.Phylogenomics-guided discovery of a novel conserved cassette of short linear motifs in BubR1 essential for the spindle checkpoint.The ABBA motif binds APC/C activators and is shared by APC/C substrates and regulatorsUse of host-like peptide motifs in viral proteins is a prevalent strategy in host-virus interactions.Proteome-wide analysis of human disease mutations in short linear motifs: neglected players in cancer?Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway.Prediction of protein disorder based on IUPred.Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity.PSSMSearch: a server for modeling, visualization, proteome-wide discovery and annotation of protein motif specificity determinants.
P2860
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P2860
SLiMPrints: conservation-based discovery of functional motif fingerprints in intrinsically disordered protein regions
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2012 nî lūn-bûn
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2012年の論文
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2012年学术文章
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2012年学术文章
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2012年学术文章
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2012年学术文章
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2012年学术文章
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2012年學術文章
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name
SLiMPrints: conservation-based ...... lly disordered protein regions
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SLiMPrints: conservation-based ...... lly disordered protein regions
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type
label
SLiMPrints: conservation-based ...... lly disordered protein regions
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SLiMPrints: conservation-based ...... lly disordered protein regions
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prefLabel
SLiMPrints: conservation-based ...... lly disordered protein regions
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SLiMPrints: conservation-based ...... lly disordered protein regions
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P2093
P2860
P50
P356
P1476
SLiMPrints: conservation-based ...... lly disordered protein regions
@en
P2093
Denis C Shields
Joanne L Cowan
Mark J Coldwell
P2860
P304
10628-10641
P356
10.1093/NAR/GKS854
P407
P577
2012-09-12T00:00:00Z