Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA.
about
Identifying selection in the within-host evolution of influenza using viral sequence dataResidual viremia in an RT-SHIV rhesus macaque HAART model marked by the presence of a predominant plasma clone and a lack of viral evolutionComparison of 454 Ultra-Deep Sequencing and Allele-Specific Real-Time PCR with Regard to the Detection of Emerging Drug-Resistant Minor HIV-1 Variants after Antiretroviral Prophylaxis for Vertical TransmissionAn Efficient Microarray-Based Genotyping Platform for the Identification of Drug-Resistance Mutations in Majority and Minority Subpopulations of HIV-1 QuasispeciesFrameshift alignment: statistics and post-genomic applicationsIdentification of diverse full-length endogenous betaretroviruses in megabats and microbatsNautilus: a bioinformatics package for the analysis of HIV type 1 targeted deep sequencing data.PCR-induced transitions are the major source of error in cleaned ultra-deep pyrosequencing dataIndel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing dataPAPNC, a novel method to calculate nucleotide diversity from large scale next generation sequencing data.Sensitive deep-sequencing-based HIV-1 genotyping assay to simultaneously determine susceptibility to protease, reverse transcriptase, integrase, and maturation inhibitors, as well as HIV-1 coreceptor tropism.MAGERI: Computational pipeline for molecular-barcoded targeted resequencing.Analysis of plant microbe interactions in the era of next generation sequencing technologies.A high-throughput assay for quantitative measurement of PCR errors.Validation of an oligonucleotide ligation assay for quantification of human immunodeficiency virus type 1 drug-resistant mutants by use of massively parallel sequencingOligotyping analysis of the human oral microbiomeThe antibody genetics of multiple sclerosis: comparing next-generation sequencing to sanger sequencingTargeted deep sequencing of HIV-1 using the IonTorrentPGM platformAnalysis of the evolution and structure of a complex intrahost viral population in chronic hepatitis C virus mapped by ultradeep pyrosequencing.Next-generation sequencing of HIV-1 RNA genomes: determination of error rates and minimizing artificial recombinationCross-clade simultaneous HIV drug resistance genotyping for reverse transcriptase, protease, and integrase inhibitor mutations by Illumina MiSeq.Silent mutations at codons 65 and 66 in reverse transcriptase alleviate indel formation and restore fitness in subtype B HIV-1 containing D67N and K70R drug resistance mutations.Extensive recombination due to heteroduplexes generates large amounts of artificial gene fragments during PCRA general method to eliminate laboratory induced recombinants during massive, parallel sequencing of cDNA library.Challenges with using primer IDs to improve accuracy of next generation sequencing.High-Throughput, Amplicon-Based Sequencing of the CREBBP Gene as a Tool to Develop a Universal Platform-Independent AssayClickSeq: Fragmentation-Free Next-Generation Sequencing via Click Ligation of Adaptors to Stochastically Terminated 3'-Azido cDNAsRetrohoming of a Mobile Group II Intron in Human Cells Suggests How Eukaryotes Limit Group II Intron ProliferationComparison of Major and Minor Viral SNPs Identified through Single Template Sequencing and Pyrosequencing in Acute HIV-1 Infection.New bioinformatic tool for quick identification of functionally relevant endogenous retroviral inserts in human genome.Ultrasensitive single-genome sequencing: accurate, targeted, next generation sequencing of HIV-1 RNA.Quantifying Next Generation Sequencing Sample Pre-Processing Bias in HIV-1 Complete Genome Sequencing.Genome plasticity of triple-reassortant H1N1 influenza A virus during infection of vaccinated pigs.Genome sequencing accuracy by RCA-seq versus long PCR template cloning and sequencing in identification of human papillomavirus type 58.Large-scale development of gene-associated single-nucleotide polymorphism markers for molluscan population genomic, comparative genomic, and genome-wide association studiesDeep sequencing: becoming a critical tool in clinical virology.Beyond the whole genome consensus: unravelling of PRRSV phylogenomics using next generation sequencing technologies.Ultra-Deep Sequencing Analysis on HIV Drug-Resistance-Associated Mutations Among HIV-Infected Individuals: First Report from the Philippines.Artifact-Free Quantification and Sequencing of Rare Recombinant Viruses by Using Drop-Based Microfluidics.Next-generation sequencing can reveal in vitro-generated PCR crossover products: some artifactual sequences correspond to HLA alleles in the IMGT/HLA database.
P2860
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P2860
Analysis of 454 sequencing error rate, error sources, and artifact recombination for detection of Low-frequency drug resistance mutations in HIV-1 DNA.
description
2013 nî lūn-bûn
@nan
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
2013年论文
@zh
2013年论文
@zh-cn
name
Analysis of 454 sequencing err ...... stance mutations in HIV-1 DNA.
@ast
Analysis of 454 sequencing err ...... stance mutations in HIV-1 DNA.
@en
type
label
Analysis of 454 sequencing err ...... stance mutations in HIV-1 DNA.
@ast
Analysis of 454 sequencing err ...... stance mutations in HIV-1 DNA.
@en
prefLabel
Analysis of 454 sequencing err ...... stance mutations in HIV-1 DNA.
@ast
Analysis of 454 sequencing err ...... stance mutations in HIV-1 DNA.
@en
P2093
P2860
P356
P1433
P1476
Analysis of 454 sequencing err ...... stance mutations in HIV-1 DNA.
@en
P2093
Alexander Levitsky
Claudia Stewart
Frank Maldarelli
John M Coffin
John W Mellors
Jonathan E Spindler
Natalia Volfovsky
Robert M Stephens
Valerie F Boltz
P2860
P2888
P356
10.1186/1742-4690-10-18
P50
P577
2013-02-13T00:00:00Z
P5875
P6179
1047479213