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Ecology of marine Bacteroidetes: a comparative genomics approach

Ecology of marine Bacteroidetes: a comparative genomics approach

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The Vitamin B1 and B12 Required by the Marine Dinoflagellate Lingulodinium polyedrum Can be Provided by its Associated Bacterial Community in Culture Biogeochemical and Microbial Variation across 5500 km of Antarctic Surface Sediment Implicates Organic Matter as a Driver of Benthic Community Structure.Microbial Surface Colonization and Biofilm Development in Marine Environments Linking geology and microbiology: inactive pockmarks affect sediment microbial community structure.The unique chemistry of Eastern Mediterranean water masses selects for distinct microbial communities by depth Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions Genome-Based Taxonomic Classification of Bacteroidetes Thermal discharge-created increasing temperatures alter the bacterioplankton composition and functional redundancy Twelve previously unknown phage genera are ubiquitous in global oceans A new tool for long-term studies of POM-bacteria interactions: overcoming the century-old Bottle Effect.Comparative Analysis of Cellulophaga algicola and Flavobacterium johnsoniae Gliding Motility.Draconibacterium filum sp. nov., a new species of the genus of Draconibacterium from sediment of the east coast of the Korean Peninsula.Consequences of increased terrestrial dissolved organic matter and temperature on bacterioplankton community composition during a Baltic Sea mesocosm experiment.Genome Reconstruction from Metagenomic Data Sets Reveals Novel Microbes in the Brackish Waters of the Caspian Sea Isolation and Complete Genome Sequence of Algibacter alginolytica sp. nov., a Novel Seaweed-Degrading Bacteroidetes Bacterium with Diverse Putative Polysaccharide Utilization Loci Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.Syntrophic linkage between predatory Carpediemonas and specific prokaryotic populations Intertidal epilithic bacteria diversity changes along a naturally occurring carbon dioxide and pH gradient.Comparative Metagenomics of the Polymicrobial Black Band Disease of Corals.Insights from the genome annotation of Elizabethkingia anophelis from the malaria vector Anopheles gambiae.Bacterial Biogeography across the Amazon River-Ocean Continuum.The pattern of change in the abundances of specific bacterioplankton groups is consistent across different nutrient-enriched habitats in Crete Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes 'Gramella forsetii' KT0803.Stimulation of growth by proteorhodopsin phototrophy involves regulation of central metabolic pathways in marine planktonic bacteria Diverse sulfate-reducing bacteria of the Desulfosarcina/Desulfococcus clade are the key alkane degraders at marine seeps.Metaphylogenomic and potential functionality of the limpet Patella pellucida's gastrointestinal tract microbiome Taxonomic composition of the particle-attached and free-living bacterial assemblages in the Northwest Mediterranean Sea analyzed by pyrosequencing of the 16S rRNA.Lack of a type-2 glycosyltransferase in the fish pathogen Flavobacterium psychrophilum determines pleiotropic changes and loss of virulence.Comparative genomic analysis indicates that niche adaptation of terrestrial Flavobacteria is strongly linked to plant glycan metabolism.Ubiquity and diversity of heterotrophic bacterial nasA genes in diverse marine environments.Community structure and biogeochemical impacts of microbial life on floating pumice.Bacterial community shift is induced by dynamic environmental parameters in a changing coastal ecosystem (northern Adriatic, northeastern Mediterranean Sea)--a 2-year time-series study.Revealing microbial functional activities in the Red Sea sponge Stylissa carteri by metatranscriptomics.Connecting biodiversity and potential functional role in modern euxinic environments by microbial metagenomics Seawater mesocosm experiments in the Arctic uncover differential transfer of marine bacteria to aerosols.Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans.Different utilization of alginate and other algal polysaccharides by marine Alteromonas macleodii ecotypes.Bacterial biogeography in the coastal waters of northern Zhejiang, East China Sea is highly controlled by spatially structured environmental gradients.Niches of two polysaccharide-degrading Polaribacter isolates from the North Sea during a spring diatom bloom.Unveiling the metabolic potential of two soil-derived microbial consortia selected on wheat straw.

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Ecology of marine Bacteroidetes: a comparative genomics approach

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2013 nî lūn-bûn

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Ecology of marine Bacteroidetes: a comparative genomics approach

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Ecology of marine Bacteroidetes: a comparative genomics approach

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Ecology of marine Bacteroidetes: a comparative genomics approach

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Ecology of marine Bacteroidetes: a comparative genomics approach

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Ecology of marine Bacteroidetes: a comparative genomics approach

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The ISME Journal

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Ecology of marine Bacteroidetes: a comparative genomics approach

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Beatriz Fernández-Gómez

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Jarone Pinhassi

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Margarete Schüler

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Michael Richter

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P2860

A guild of 45 CRISPR-associated (Cas) protein families and multiple CRISPR/Cas subtypes exist in prokaryotic genomes.

Proteorhodopsin phototrophy promotes survival of marine bacteria during starvation

Energy starved Candidatus Pelagibacter ubique substitutes light-mediated ATP production for endogenous carbon respiration

Genome Streamlining in a Cosmopolitan Oceanic Bacterium

Genome sequence of the deep-sea gamma-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

IslandViewer: an integrated interface for computational identification and visualization of genomic islands

The Pfam protein families database

InterPro: the integrative protein signature database

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

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1026-1037

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scholarly article

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10.1038/ISMEJ.2012.169

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5

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7

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Silvia G. Acinas

Carlos Pedrós-Alió

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2013-01-10T00:00:00Z

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234099053

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23303374

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3635232

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