Systematic multiscale parameterization of heterogeneous elastic network models of proteins
about
"Fluctuograms" reveal the intermittent intra-protein communication in subtilisin Carlsberg and correlate mechanical coupling with co-evolutionDefining coarse-grained representations of large biomolecules and biomolecular complexes from elastic network models.Multiscale network model for large protein dynamics.Rapid sampling of all-atom peptides using a library-based polymer-growth approach.Coarse-Grained Models for Protein-Cell Membrane Interactions.Using entropy maximization to understand the determinants of structural dynamics beyond native contact topologyMulti-scale characterization of the energy landscape of proteins with application to the C3D/Efb-C complex.Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins.Multiscale simulation of protein mediated membrane remodeling.The mechanical properties of PCNA: implications for the loading and function of a DNA sliding clamp.Monte Carlo, harmonic approximation, and coarse-graining approaches for enhanced sampling of biomolecular structure.Reconstructing protein remodeled membranes in molecular detail from mesoscopic modelsHierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scalesSolvent-Free, Highly Coarse-Grained Models for Charged Lipid Systems.Optimization of an elastic network augmented coarse grained model to study CCMV capsid deformationElectrostatic interactions between the Bni1p Formin FH2 domain and actin influence actin filament nucleationMultiscale Modeling of Functionalized Nanocarriers in Targeted Drug Delivery.Elastic Network Models are Robust to Variations in FormalismCoarse-graining provides insights on the essential nature of heterogeneity in actin filamentsSystematic multiscale simulation of membrane protein systems.Normal mode analysis with molecular geometry restraints: bridging molecular mechanics and elastic modelsUnderstanding the role of amphipathic helices in N-BAR domain driven membrane remodelingSimulating rare events using a weighted ensemble-based string method.PIM: phase integrated method for normal mode analysis of biomolecules in a crystalline environmentKey intermolecular interactions in the E. coli 70S ribosome revealed by coarse-grained analysis.Membrane binding and self-association of the epsin N-terminal homology domainMolecular origins of cofilin-linked changes in actin filament mechanics.Effects of ATP and actin-filament binding on the dynamics of the myosin II S1 domain.Minimalist models for proteins: a comparative analysis.Multiscale modeling and mechanics of filamentous actin cytoskeleton.Perspective: Coarse-grained models for biomolecular systems.Structure-Encoded Global Motions and Their Role in Mediating Protein-Substrate Interactions.Multiscale simulations of protein-facilitated membrane remodelingMultiscale design of coarse-grained elastic network-based potentials for the μ opioid receptor.Minimizing memory as an objective for coarse-graining.Exploring the dynamics of four RNA-dependent RNA polymerases by a coarse-grained model.Multiscale virtual particle based elastic network model (MVP-ENM) for normal mode analysis of large-sized biomolecules.Coarse-Grained Directed Simulation.Solvated dissipative electro-elastic network model of hydrated proteins.A new algorithm for construction of coarse-grained sites of large biomolecules.
P2860
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P2860
Systematic multiscale parameterization of heterogeneous elastic network models of proteins
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年論文
@yue
2008年論文
@zh-hant
2008年論文
@zh-hk
2008年論文
@zh-mo
2008年論文
@zh-tw
2008年论文
@wuu
2008年论文
@zh
2008年论文
@zh-cn
name
Systematic multiscale paramete ...... tic network models of proteins
@en
type
label
Systematic multiscale paramete ...... tic network models of proteins
@en
prefLabel
Systematic multiscale paramete ...... tic network models of proteins
@en
P2860
P1433
P1476
Systematic multiscale paramete ...... tic network models of proteins
@en
P2093
Edward Lyman
Jim Pfaendtner
P2860
P304
P356
10.1529/BIOPHYSJ.108.139733
P407
P577
2008-07-25T00:00:00Z