High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly.
about
Crystal structure of the HCV IRES central domain reveals strategy for start-codon positioningProgress and challenges for chemical probing of RNA structure inside living cellsTranscending the prediction paradigm: novel applications of SHAPE to RNA function and evolutionSingle-Molecule Pull-Down FRET to Dissect the Mechanisms of Biomolecular MachinesNovel modifications in RNAChemical Tools for Dissecting the Role of lncRNAs in Epigenetic RegulationVisualizing the ai5γ group IIB intronHepatitis delta antigen requires a flexible quasi-double-stranded RNA structure to bind and condense hepatitis delta virus RNA in a ribonucleoprotein complex.Structure and dynamics of the HIV-1 frameshift element RNANonhierarchical ribonucleoprotein assembly suggests a strain-propagation model for protein-facilitated RNA folding.Structural determinants of an internal ribosome entry site that direct translational reading frame selection.SHAPE-directed RNA secondary structure prediction.Protein-RNA footprinting: an evolving tool.Unconventional miR-122 binding stabilizes the HCV genome by forming a trimolecular RNA structure.RNA secondary structure prediction using high-throughput SHAPEThe mechanisms of RNA SHAPE chemistryExploring RNA structural codes with SHAPE chemistry.HOTAIR forms an intricate and modular secondary structure.Monitoring equilibrium changes in RNA structure by 'peroxidative' and 'oxidative' hydroxyl radical footprintingNative Purification and Analysis of Long RNAsSelective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysisIsoenergetic microarrays to study the structure and interactions of DsrA and OxyS RNAs in two- and three-component complexes.Distribution of mutational fitness effects and of epistasis in the 5' untranslated region of a plant RNA virus.Pri-miR-17-92a transcript folds into a tertiary structure and autoregulates its processing.Three-dimensional RNA structure refinement by hydroxyl radical probing.Global shape mimicry of tRNA within a viral internal ribosome entry site mediates translational reading frame selection.Internal translation initiation from HIV-1 transcripts is conferred by a common RNA structureQuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis.Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNAA 3'-end structure in RNA2 of a crinivirus is essential for viral RNA synthesis and contributes to replication-associated translation activity.Using RNA inverse folding to identify IRES-like structural subdomains.Progress and outlook in structural biology of large viral RNAs.Fingerprinting the junctions of RNA structure by an open-paddlewheel diruthenium compound.Magnesium-dependent folding of a picornavirus IRES element modulates RNA conformation and eIF4G interaction.Secondary RNA structure and nucleotide specificity contribute to internal initiation mediated by the human tau 5' leader.RNA structure analysis of viruses using SHAPESHAPE analysis of the htrA RNA thermometer from Salmonella enterica.Local RNA flexibility perturbation of the IRES element induced by a novel ligand inhibits viral RNA translation.Global RNA structure analysis of poliovirus identifies a conserved RNA structure involved in viral replication and infectivity.Principles for understanding the accuracy of SHAPE-directed RNA structure modeling.
P2860
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P2860
High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly.
description
2009 nî lūn-bûn
@nan
2009年の論文
@ja
2009年論文
@yue
2009年論文
@zh-hant
2009年論文
@zh-hk
2009年論文
@zh-mo
2009年論文
@zh-tw
2009年论文
@wuu
2009年论文
@zh
2009年论文
@zh-cn
name
High-throughput SHAPE and hydr ...... nd ribonucleoprotein assembly.
@en
type
label
High-throughput SHAPE and hydr ...... nd ribonucleoprotein assembly.
@en
prefLabel
High-throughput SHAPE and hydr ...... nd ribonucleoprotein assembly.
@en
P2093
P2860
P1476
High-throughput SHAPE and hydr ...... nd ribonucleoprotein assembly.
@en
P2093
Caia D S Duncan
Jennifer L McGinnis
Kevin M Weeks
P2860
P356
10.1016/S0076-6879(09)68004-6
P407
P577
2009-01-01T00:00:00Z