Molecular dynamics simulations and their application to four-stranded DNA.
about
Molecular dynamics simulations of G-DNA and perspectives on the simulation of nucleic acid structuresA crystallographic and modelling study of a human telomeric RNA (TERRA) quadruplexConformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale.Molecular models for intrastrand DNA G-quadruplexes.Dynamics of the base of ribosomal A-site finger revealed by molecular dynamics simulations and Cryo-EMFragment-based drug discovery using a multidomain, parallel MD-MM/PBSA screening protocol.Structural dynamics of human telomeric G-quadruplex loops studied by molecular dynamics simulations.Interactions of a platinum-modified perylene derivative with the human telomeric G-quadruplex.Extended molecular dynamics of a c-kit promoter quadruplex.Reference simulations of noncanonical nucleic acids with different χ variants of the AMBER force field: quadruplex DNA, quadruplex RNA and Z-DNA.Stability and kinetics of G-quadruplex structuresTheoretical studies of RNA catalysis: hybrid QM/MM methods and their comparison with MD and QM.Overview of formation of G-quadruplex structures.Molecular modeling and dynamics studies with explicit inclusion of electronic polarizability. Theory and applicationsUnfolding and conformational variations of thrombin-binding DNA aptamers: synthesis, circular dichroism and molecular dynamics simulations.Cation binding to 15-TBA quadruplex DNA is a multiple-pathway cation-dependent process.Molecular modeling of nucleic Acid structure: electrostatics and solvation.Insight into G-DNA structural polymorphism and folding from sequence and loop connectivity through free energy analysis.Molecular dynamics and principal components analysis of human telomeric quadruplex multimers.Tuning supramolecular G-quadruplexes with mono- and divalent cations.Extensive molecular dynamics simulations showing that canonical G8 and protonated A38H+ forms are most consistent with crystal structures of hairpin ribozyme.Molecular dynamics simulations identify time scale of conformational changes responsible for conformational selection in molecular recognition of HIV-1 transactivation responsive RNA.Molecular dynamics and quantum mechanics of RNA: conformational and chemical change we can believe inStructural dynamics of possible late-stage intermediates in folding of quadruplex DNA studied by molecular simulations.Guanine base stacking in G-quadruplex nucleic acids.The critical effect of polarization on the dynamical structure of guanine quadruplex DNA.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.A coarse-grained model for DNA origami.Probing the Limits of Supramolecular G-Quadruplexes Using Atomistic Molecular Dynamics Simulations.Impact of planarity of unfused aromatic molecules on G-quadruplex binding: learning from isaindigotone derivatives.Investigation of the nanoviscosity effect of a G-quadruplex and single-strand DNA using fluorescence correlation spectroscopy.Insight into nucleic acid counterion interactions from inside molecular dynamics simulations is “worth its salt”
P2860
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P2860
Molecular dynamics simulations and their application to four-stranded DNA.
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
2007年论文
@zh
2007年论文
@zh-cn
name
Molecular dynamics simulations and their application to four-stranded DNA.
@en
type
label
Molecular dynamics simulations and their application to four-stranded DNA.
@en
prefLabel
Molecular dynamics simulations and their application to four-stranded DNA.
@en
P2860
P1433
P1476
Molecular dynamics simulations and their application to four-stranded DNA
@en
P2093
Nad'a Spacková
P2860
P304
P356
10.1016/J.YMETH.2007.02.004
P50
P577
2007-12-01T00:00:00Z