The cellular environment stabilizes adenine riboswitch RNA structure
about
RNA systems biology: uniting functional discoveries and structural tools to understand global roles of RNAsReview toward all RNA structures, conciselyRNA structural analysis by evolving SHAPE chemistryPhysicochemical properties of cells and their effects on intrinsically disordered proteins (IDPs)The Effects of Lipid Membranes, Crowding and Osmolytes on the Aggregation, and Fibrillation Propensity of Human IAPPSimultaneous characterization of cellular RNA structure and function with in-cell SHAPE-SeqStructural basis for diversity in the SAM clan of riboswitchesProgress and challenges for chemical probing of RNA structure inside living cellsSHAPE analysis of small RNAs and riboswitchesChallenge of mimicking the influences of the cellular environment on RNA structure by PEG-induced macromolecular crowdingAn Open and Shut Case: The Interaction of Magnesium with MST EnzymesSHAPE Selection (SHAPES) enrich for RNA structure signal in SHAPE sequencing-based probing dataStructure and dynamics of the HIV-1 frameshift element RNATheory and Modeling of RNA Structure and Interactions with Metal Ions and Small Molecules.SHAPE-Seq 2.0: systematic optimization and extension of high-throughput chemical probing of RNA secondary structure with next generation sequencing.Single-molecule conformational dynamics of a biologically functional hydroxocobalamin riboswitch.Structure-guided mutational analysis of gene regulation by the Bacillus subtilis pbuE adenine-responsive riboswitch in a cellular context.In-cell SHAPE reveals that free 30S ribosome subunits are in the inactive state.Specific ion effects on macromolecular interactions in Escherichia coli extracts.Selective 2'-hydroxyl acylation analyzed by primer extension and mutational profiling (SHAPE-MaP) for direct, versatile and accurate RNA structure analysisMechanistic Analysis of Activation of the Innate Immune Sensor PKR by Bacterial RNAJNSViewer-A JavaScript-based Nucleotide Sequence Viewer for DNA/RNA secondary structures.Bacterial Riboswitches and Ribozymes Potently Activate the Human Innate Immune Sensor PKRUsing in-cell SHAPE-Seq and simulations to probe structure-function design principles of RNA transcriptional regulators.Detection of RNA-Protein Interactions in Living Cells with SHAPE.Characterizing RNA structures in vitro and in vivo with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq).Ribosome RNA assembly intermediates visualized in living cells.SHAPE reveals transcript-wide interactions, complex structural domains, and protein interactions across the Xist lncRNA in living cells.A versatile framework for microbial engineering using synthetic non-coding RNAs.Insights into RNA structure and function from genome-wide studies.RNA Hairpin Folding in the Crowded Cell.Probing dimensionality beyond the linear sequence of mRNA.Visualization of RNA structure models within the Integrative Genomics Viewer.Bridging the gap between in vitro and in vivo RNA folding.Model studies of the effects of intracellular crowding on nucleic acid interactions.The 2D Structure of the T. brucei Preedited RPS12 mRNA Is Not Affected by Macromolecular Crowding.Crowding in Cellular Environments at an Atomistic Level from Computer Simulations.Ligand-modulated folding of the full-length adenine riboswitch probed by NMR and single-molecule FRET spectroscopy.RNA motif discovery by SHAPE and mutational profiling (SHAPE-MaP).Molecular crowding and early evolution.
P2860
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P2860
The cellular environment stabilizes adenine riboswitch RNA structure
description
2013 nî lūn-bûn
@nan
2013年の論文
@ja
2013年論文
@yue
2013年論文
@zh-hant
2013年論文
@zh-hk
2013年論文
@zh-mo
2013年論文
@zh-tw
2013年论文
@wuu
2013年论文
@zh
2013年论文
@zh-cn
name
The cellular environment stabilizes adenine riboswitch RNA structure
@en
type
label
The cellular environment stabilizes adenine riboswitch RNA structure
@en
prefLabel
The cellular environment stabilizes adenine riboswitch RNA structure
@en
P2093
P2860
P356
P1433
P1476
The cellular environment stabilizes adenine riboswitch RNA structure
@en
P2093
Gary J Pielak
Jennifer L McGinnis
Jillian Tyrrell
Kevin M Weeks
P2860
P304
P356
10.1021/BI401207Q
P407
P577
2013-11-20T00:00:00Z