A comparative study of motor-protein motions by using a simple elastic-network model.
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Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and DynamicsBoosting antibody developability through rational sequence optimization.In silico investigation of conformational motions in superfamily 2 helicase proteinsNonlinearity of mechanochemical motions in motor proteinsTALEs from a spring--superelasticity of Tal effector protein structuresTwo Distinct Mechanisms for Actin Capping Protein Regulation—Steric and Allosteric InhibitionModulation of Global Low-Frequency Motions Underlies Allosteric Regulation: Demonstration in CRP/FNR Family Transcription FactorsComparative Normal Mode Analysis of the Dynamics of DENV and ZIKV CapsidsMaking ATP.Versatile annotation and publication quality visualization of protein complexes using POLYVIEW-3DAllosteric pathway identification through network analysis: from molecular dynamics simulations to interactive 2D and 3D graphs.Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin IINormal Mode Flexible Fitting of High-Resolution Structures of Biological Molecules Toward SAXS DataAccurate flexible fitting of high-resolution protein structures into cryo-electron microscopy maps using coarse-grained pseudo-energy minimizationTowards the prediction of order parameters from molecular dynamics simulations in proteins.Nonlinear relaxation dynamics in elastic networks and design principles of molecular machines.Myosin dynamics on the millisecond time scale.Tracing entire operation cycles of molecular motor hepatitis C virus helicase in structurally resolved dynamical simulations.WEBnm@ v2.0: Web server and services for comparing protein flexibilityEscherichia coli adenylate kinase dynamics: comparison of elastic network model modes with mode-coupling (15)N-NMR relaxation data.On the use of low-frequency normal modes to enforce collective movements in refining macromolecular structural models.MAVENs: motion analysis and visualization of elastic networks and structural ensembles.Molecular dynamics simulations suggest that RNA three-way junctions can act as flexible RNA structural elements in the ribosomeNormal-modes-based prediction of protein conformational changes guided by distance constraintsChaperones rescue luciferase folding by separating its domains.Probing the local dynamics of nucleotide-binding pocket coupled to the global dynamics: myosin versus kinesin.Coarse-grained modeling of the actin filament derived from atomistic-scale simulations.Can conformational change be described by only a few normal modes?Evaluating caveolin interactions: do proteins interact with the caveolin scaffolding domain through a widespread aromatic residue-rich motif?Atomistic simulation approach to a continuum description of self-assembled beta-sheet filaments.Common mechanism of pore opening shared by five different potassium channelsModeling protein conformational changes by iterative fitting of distance constraints using reoriented normal modes.Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variationsHysteresis-based mechanism for the directed motility of the Ncd motor.A combined coarse-grained and all-atom simulation of TRPV1 channel gating and heat activationSimilarity in Shape Dictates Signature Intrinsic Dynamics Despite No Functional Conservation in TIM Barrel Enzymes.Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations.Measuring the Elasticity of Poly-l-Proline Helices with Terahertz Spectroscopy.Packing regularities in biological structures relate to their dynamics.Structure-based simulations of the translocation mechanism of the hepatitis C virus NS3 helicase along single-stranded nucleic acid.
P2860
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P2860
A comparative study of motor-protein motions by using a simple elastic-network model.
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
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scientific article published on 29 October 2003
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vedecký článok
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vetenskaplig artikel
@sv
videnskabelig artikel
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vědecký článek
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name
A comparative study of motor-protein motions by using a simple elastic-network model.
@en
A comparative study of motor-protein motions by using a simple elastic-network model.
@nl
type
label
A comparative study of motor-protein motions by using a simple elastic-network model.
@en
A comparative study of motor-protein motions by using a simple elastic-network model.
@nl
prefLabel
A comparative study of motor-protein motions by using a simple elastic-network model.
@en
A comparative study of motor-protein motions by using a simple elastic-network model.
@nl
P2860
P356
P1476
A comparative study of motor-protein motions by using a simple elastic-network model.
@en
P2860
P304
13253-13258
P356
10.1073/PNAS.2235686100
P407
P577
2003-10-29T00:00:00Z