The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models.
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A global machine learning based scoring function for protein structure prediction.Identifying essential pairwise interactions in elastic network model using the alpha shape theory.Investigation of protein folding by coarse-grained molecular dynamics with the UNRES force fieldMultiscale coarse-graining of the protein energy landscapeMultiscale simulation of protein mediated membrane remodeling.A Hybrid Approach for Highly Coarse-grained Lipid Bilayer ModelsReconstructing protein remodeled membranes in molecular detail from mesoscopic modelsHierarchical coarse-graining strategy for protein-membrane systems to access mesoscopic scalesMultiscale computer simulation of the immature HIV-1 virion.Solvent-Free, Highly Coarse-Grained Models for Charged Lipid Systems.Recovering physical potentials from a model protein databankCOFFDROP: A Coarse-Grained Nonbonded Force Field for Proteins Derived from All-Atom Explicit-Solvent Molecular Dynamics Simulations of Amino AcidsMSCALE: A General Utility for Multiscale Modeling.A smoothly decoupled particle interface: new methods for coupling explicit and implicit solventCoarse-grained molecular dynamics simulation of DNA translocation in chemically modified nanopores.Multiscale simulation of microbe structure and dynamics.Multiscale reactive molecular dynamicsMicroscopic derivation of particle-based coarse-grained dynamics: Exact expression for memory function.Systematic multiscale simulation of membrane protein systems.Membrane binding and self-association of the epsin N-terminal homology domainSystematic coarse-graining of a multicomponent lipid bilayerPRIMO: A Transferable Coarse-grained Force Field for Proteins.Solvent-free lipid bilayer model using multiscale coarse-graining.Coarse-graining RNA nanostructures for molecular dynamics simulations.The multiscale coarse-graining method. I. A rigorous bridge between atomistic and coarse-grained models.Hybrid coarse-graining approach for lipid bilayers at large length and time scales.The multiscale coarse-graining method. IV. Transferring coarse-grained potentials between temperatures.Recent advances in transferable coarse-grained modeling of proteins.Minimalist models for proteins: a comparative analysis.Perspective: Coarse-grained models for biomolecular systems.Systematic coarse graining from structure using internal states: application to phospholipid/cholesterol bilayer.Reference state for the generalized Yvon-Born-Green theory: application for coarse-grained model of hydrophobic hydration.Multiscale simulations of protein-facilitated membrane remodelingMori-Zwanzig theory for dissipative forces in coarse-grained dynamics in the Markov limit.Nanoparticle interaction potentials constructed by multiscale computation.A multiscale approach to sampling nascent peptide chains in the ribosomal exit tunnel.Tabulation as a high-resolution alternative to coarse-graining protein interactions: Initial application to virus capsid subunits.Dynamic force matching: A method for constructing dynamical coarse-grained models with realistic time dependence.On the importance of shear dissipative forces in coarse-grained dynamics of molecular liquids.Functional modes and residue flexibility control the anisotropic response of guanylate kinase to mechanical stress
P2860
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P2860
The multiscale coarse-graining method. II. Numerical implementation for coarse-grained molecular models.
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on June 2008
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
@da
vědecký článek
@cs
name
The multiscale coarse-graining ...... arse-grained molecular models.
@en
The multiscale coarse-graining ...... arse-grained molecular models.
@nl
type
label
The multiscale coarse-graining ...... arse-grained molecular models.
@en
The multiscale coarse-graining ...... arse-grained molecular models.
@nl
prefLabel
The multiscale coarse-graining ...... arse-grained molecular models.
@en
The multiscale coarse-graining ...... arse-grained molecular models.
@nl
P2093
P2860
P356
P1476
The multiscale coarse-graining ...... arse-grained molecular models.
@en
P2093
Gary S Ayton
Hans C Andersen
Jhih-Wei Chu
Sergei Izvekov
Yanting Wang
P2860
P304
P356
10.1063/1.2938857
P407
P577
2008-06-01T00:00:00Z