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YUP.SCX: coaxing atomic models into medium resolution electron density maps.

YUP.SCX: coaxing atomic models into medium resolution electron density maps.

http://www.wikidata.org/entity/Q37243286

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A pseudoatomic model of the dynamin polymer identifies a hydrolysis-dependent powerstroke EMDataBank.org: unified data resource for CryoEM Three-dimensional EM structure of an intact activator-dependent transcription initiation complex Complete Structural Model of Escherichia coli RNA Polymerase from a Hybrid Approach Cryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factor Phosphorylated Smooth Muscle Heavy Meromyosin Shows an Open Conformation Linked to Activation A Dynamin Mutant Defines a Superconstricted Prefission State Energy barriers and driving forces in tRNA translocation through the ribosome Refinement of atomic models in high resolution EM reconstructions using Flex-EM and local assessment.Accurate flexible fitting of high-resolution protein structures into cryo-electron microscopy maps using coarse-grained pseudo-energy minimization Computational methods for constructing protein structure models from 3D electron microscopy maps.Unified data resource for cryo-EM.Exploring the spatial and temporal organization of a cell's proteome Consensus among flexible fitting approaches improves the interpretation of cryo-EM data.Putting structure into context: fitting of atomic models into electron microscopic and electron tomographic reconstructions.Molecular dynamics flexible fitting: a practical guide to combine cryo-electron microscopy and X-ray crystallography Analyses of subnanometer resolution cryo-EM density maps Fitting multimeric protein complexes into electron microscopy maps using 3D Zernike descriptors Reconstructing virus structures from nanometer to near-atomic resolutions with cryo-electron microscopy and tomography.Bayesian Modeling of Biomolecular Assemblies with Cryo-EM Maps.Flexible fitting to cryo-EM density map using ensemble molecular dynamics simulations.Tools for the Cryo-EM Gold Rush: Going from the cryo-EM map to the atomistic model.Flexible Fitting of Atomic Models into Cryo-EM Density Maps Guided by Helix Correspondences.Structural modeling from electron microscopy data

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YUP.SCX: coaxing atomic models into medium resolution electron density maps.

http://www.wikidata.org/entity/Q37243286

description

article científic

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article scientifique

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articolo scientifico

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artigo científico

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bilimsel makale

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scientific article published on 16 May 2008

@en

vedecký článok

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vetenskaplig artikel

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videnskabelig artikel

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vědecký článek

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name

YUP.SCX: coaxing atomic models into medium resolution electron density maps.

@en

YUP.SCX: coaxing atomic models into medium resolution electron density maps.

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type

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YUP.SCX: coaxing atomic models into medium resolution electron density maps.

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YUP.SCX: coaxing atomic models into medium resolution electron density maps.

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prefLabel

YUP.SCX: coaxing atomic models into medium resolution electron density maps.

@en

YUP.SCX: coaxing atomic models into medium resolution electron density maps.

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J.JSB.2008.05.001

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Journal of Structural Biology

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YUP.SCX: coaxing atomic models into medium resolution electron density maps.

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Batsal Devkota

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Robert K-Z Tan

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Stephen C Harvey

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P2860

The Protein Data Bank

Optimization by Simulated Annealing

Study of the structural dynamics of the E coli 70S ribosome using real-space refinement

Incorporation of aminoacyl-tRNA into the ribosome as seen by cryo-electron microscopy

Adenylate kinase motions during catalysis: an energetic counterweight balancing substrate binding

VMD: visual molecular dynamics

SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

UCSF Chimera--a visualization system for exploratory research and analysis

Crystallographic R factor refinement by molecular dynamics

Structure of the complex between adenylate kinase from Escherichia coli and the inhibitor Ap5A refined at 1.9 A resolution. A model for a catalytic transition state

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163-174

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scholarly article

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10.1016/J.JSB.2008.05.001

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2

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163

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2008-05-16T00:00:00Z

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5282864

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18572416

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