How kinetics within the unfolded state affects protein folding: an analysis based on markov state models and an ultra-long MD trajectory
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Principles and Overview of Sampling Methods for Modeling Macromolecular Structure and DynamicsMarkov state models of biomolecular conformational dynamicsOn the Application of Molecular-Dynamics Based Markov State Models to Functional Proteins.Role of tryptophan side chain dynamics on the Trp-cage mini-protein folding studied by molecular dynamics simulations.Systematically constructing kinetic transition network in polypeptide from top to down: trajectory mapping.Extracting intrinsic dynamic parameters of biomolecular folding from single-molecule force spectroscopy experiments.Accelerated molecular dynamics simulations of protein folding.Accurate Estimation of Protein Folding and Unfolding Times: Beyond Markov State Models.How long does it take to equilibrate the unfolded state of a protein?Connecting free energy surfaces in implicit and explicit solvent: an efficient method to compute conformational and solvation free energiesTemperature evolution of Trp-cage folding pathways: An analysis by dividing the probability flux field into stream tubes.Hydrodynamic description of protein folding: the decrease of the probability fluxes as an indicator of transition states in two-state folders.Computing conformational free energy differences in explicit solvent: An efficient thermodynamic cycle using an auxiliary potential and a free energy functional constructed from the end points.First Passage Times, Lifetimes, and Relaxation Times of Unfolded Proteins.
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P2860
How kinetics within the unfolded state affects protein folding: an analysis based on markov state models and an ultra-long MD trajectory
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article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 13 June 2013
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
How kinetics within the unfold ...... nd an ultra-long MD trajectory
@en
How kinetics within the unfold ...... d an ultra-long MD trajectory.
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type
label
How kinetics within the unfold ...... nd an ultra-long MD trajectory
@en
How kinetics within the unfold ...... d an ultra-long MD trajectory.
@nl
prefLabel
How kinetics within the unfold ...... nd an ultra-long MD trajectory
@en
How kinetics within the unfold ...... d an ultra-long MD trajectory.
@nl
P2093
P2860
P356
P1476
How kinetics within the unfold ...... nd an ultra-long MD trajectory
@en
P2093
Nan-jie Deng
Ronald M Levy
P2860
P304
12787-12799
P356
10.1021/JP401962K
P407
P577
2013-06-13T00:00:00Z