A rapid coarse residue-based computational method for x-ray solution scattering characterization of protein folds and multiple conformational states of large protein complexes.
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Allosteric activation transitions in enzymes and biomolecular motors: insights from atomistic and coarse-grained simulationsSubstrate-specific reorganization of the conformational ensemble of CSK implicates novel modes of kinase functionProteins at work: a combined small angle X-RAY scattering and theoretical determination of the multiple structures involved on the protein kinase functional landscapeMARTINI bead form factors for the analysis of time-resolved X-ray scattering of proteins.Normal Mode Flexible Fitting of High-Resolution Structures of Biological Molecules Toward SAXS DataAccurate flexible fitting of high-resolution protein structures to small-angle x-ray scattering data using a coarse-grained model with implicit hydration shell.Improving protein template recognition by using small-angle x-ray scattering profiles.Multi-wavelength anomalous diffraction using medium-angle X-ray solution scattering (MADMAX).Atomic-resolution structural information from scattering experiments on macromolecules in solution.A hierarchical algorithm for fast Debye summation with applications to small angle scatteringDetermining RNA three-dimensional structures using low-resolution data.Sample preparation, data collection, and preliminary data analysis in biomolecular solution X-ray scatteringValidating solution ensembles from molecular dynamics simulation by wide-angle X-ray scattering data.Uniqueness of models from small-angle scattering data: the impact of a hydration shell and complementary NMR restraints.Deciphering solution scattering data with experimentally guided molecular dynamics simulations.Atomistic modelling of scattering data in the Collaborative Computational Project for Small Angle Scattering (CCP-SAS).RNA structure determination using SAXS data.Improved fitting of solution X-ray scattering data to macromolecular structures and structural ensembles by explicit water modeling.Effects of ionic strength on SAXS data for proteins revealed by molecular dynamics simulations.FoXS: a web server for rapid computation and fitting of SAXS profilesMultidomain assembled states of Hck tyrosine kinase in solution.Integrative structural modeling with small angle X-ray scattering profiles.SAXS ensemble refinement of ESCRT-III CHMP3 conformational transitionsCharacterization of proteins with wide-angle X-ray solution scattering (WAXS)Methods for SAXS-based structure determination of biomolecular complexes.Macromolecular assembly of polycystin-2 intracytosolic C-terminal domain.Modeling the hydration layer around proteins: applications to small- and wide-angle x-ray scatteringLarge-scale motions in the adenylate kinase solution ensemble: coarse-grained simulations and comparison with solution X-ray scattering.Fast antibody fragment motion: flexible linkers act as entropic springAccurate SAXS profile computation and its assessment by contrast variation experimentsAccurate optimization of amino acid form factors for computing small-angle X-ray scattering intensity of atomistic protein structures.Small-angle X-ray and neutron scattering as a tool for structural systems biology.How random are intrinsically disordered proteins? A small angle scattering perspective.Emerging applications of small angle solution scattering in structural biology.Review of the fundamental theories behind small angle X-ray scattering, molecular dynamics simulations, and relevant integrated application.Pepsi-SAXS: an adaptive method for rapid and accurate computation of small-angle X-ray scattering profiles.Thermodynamics of Hydrophobic Amino Acids in Solution: A Combined Experimental-Computational Study.Theoretical modeling of multiprotein complexes by iSPOT: Integration of small-angle X-ray scattering, hydroxyl radical footprinting, and computational docking.SAXS/SANS on Supercharged Proteins Reveals Residue-Specific Modifications of the Hydration ShellCombining NMR and small angle X-ray scattering for the study of biomolecular structure and dynamics.
P2860
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P2860
A rapid coarse residue-based computational method for x-ray solution scattering characterization of protein folds and multiple conformational states of large protein complexes.
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on June 2009
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
@da
vědecký článek
@cs
name
A rapid coarse residue-based c ...... es of large protein complexes.
@en
A rapid coarse residue-based c ...... es of large protein complexes.
@nl
type
label
A rapid coarse residue-based c ...... es of large protein complexes.
@en
A rapid coarse residue-based c ...... es of large protein complexes.
@nl
prefLabel
A rapid coarse residue-based c ...... es of large protein complexes.
@en
A rapid coarse residue-based c ...... es of large protein complexes.
@nl
P2093
P2860
P1433
P1476
A rapid coarse residue-based c ...... tes of large protein complexes
@en
P2093
Benoît Roux
Lee Makowski
Sanghyun Park
P2860
P304
P356
10.1016/J.BPJ.2009.03.036
P407
P50
P577
2009-06-01T00:00:00Z