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Intrinsic noise analyzer: a software package for the exploration of stochastic biochemical kinetics using the system size expansionMathematical models light up plant signalingSingle-molecule enzymology à la Michaelis-MentenA multi-cell, multi-scale model of vertebrate segmentation and somite formationNoise-induced modulation of the relaxation kinetics around a non-equilibrium steady state of non-linear chemical reaction networksAccounting for diffusion in agent based models of reaction-diffusion systems with application to cytoskeletal diffusionCumulative signal transmission in nonlinear reaction-diffusion networksEvaluation of rate law approximations in bottom-up kinetic models of metabolismInvestigating the robustness of the classical enzyme kinetic equations in small intracellular compartmentsA minimal model for the mitochondrial rapid mode of Ca²+ uptake mechanism.A protein turnover signaling motif controls the stimulus-sensitivity of stress response pathwaysStochastic branching-diffusion models for gene expression.Mathematical simulation of membrane protein clustering for efficient signal transductionLogic-based models in systems biology: a predictive and parameter-free network analysis method.Foundations for modeling the dynamics of gene regulatory networks: a multilevel-perspective review.Validity conditions for stochastic chemical kinetics in diffusion-limited systemsKinetic Analysis Reveals the Identity of Aβ-Metal Complex Responsible for the Initial Aggregation of Aβ in the Synapse.Effects of bursty protein production on the noisy oscillatory properties of downstream pathways.Circadian clock parameter measurement: characterization of clock transcription factors using surface plasmon resonance.A framework for modeling the relationship between cellular steady-state and stimulus-responsiveness.Kinetic modeling of riboflavin biosynthesis in Bacillus subtilis under production conditions.Molecular finite-size effects in stochastic models of equilibrium chemical systems.Anomalous fluctuation scaling laws in stochastic enzyme kinetics: increase of noise strength with the mean concentration.Monte Carlo simulations of single- and multistep enzyme-catalyzed reaction sequences: effects of diffusion, cell size, enzyme fluctuations, colocalization, and segregation.Capturing Brownian dynamics with an on-lattice model of hard-sphere diffusion.Chain length distributions in linear polyaddition proceeding in nano-scale small volumes without mass transfer.Statistical effects related to low numbers of reacting molecules analyzed for a reversible association reaction A + B = C in ideally dispersed systems: An apparent violation of the law of mass action.Comparison of different moment-closure approximations for stochastic chemical kinetics.A graph-based approach for the approximate solution of the chemical master equation.Molecular noise induces concentration oscillations in chemical systems with stable node steady states.Rigorous elimination of fast stochastic variables from the linear noise approximation using projection operators.Steady-state fluctuations of a genetic feedback loop: an exact solution.Communication: limitations of the stochastic quasi-steady-state approximation in open biochemical reaction networks.Correction factors for boundary diffusion in reaction-diffusion master equations.How accurate are the nonlinear chemical Fokker-Planck and chemical Langevin equations?Stochastic theory of large-scale enzyme-reaction networks: finite copy number corrections to rate equation models.An effective rate equation approach to reaction kinetics in small volumes: theory and application to biochemical reactions in nonequilibrium steady-state conditions.Closed-form stochastic solutions for non-equilibrium dynamics and inheritance of cellular components over many cell divisions.Simulating Kinetic Processes in Time and Space on a LatticeLinear mapping approximation of gene regulatory networks with stochastic dynamics
P2860
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P2860
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on January 2008
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
@da
vědecký článek
@cs
name
Modelling reaction kinetics inside cells
@en
Modelling reaction kinetics inside cells.
@nl
type
label
Modelling reaction kinetics inside cells
@en
Modelling reaction kinetics inside cells.
@nl
prefLabel
Modelling reaction kinetics inside cells
@en
Modelling reaction kinetics inside cells.
@nl
P2860
P356
P1476
Modelling reaction kinetics inside cells
@en
P2860
P356
10.1042/BSE0450041
P577
2008-01-01T00:00:00Z