All-atom contact model for understanding protein dynamics from crystallographic B-factors
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Integrated description of protein dynamics from room-temperature X-ray crystallography and NMRThe relation of the X-ray B-factor to protein dynamics: insights from recent dynamic solid-state NMR data.Dynamics may significantly influence the estimation of interatomic distances in biomolecular X-ray structuresPPM_One: a static protein structure based chemical shift predictor.Probing the 3-D structure, dynamics, and stability of bacterial collagenase collagen binding domain (apo- versus holo-) by limited proteolysis MALDI-TOF MS.Evaluating elastic network models of crystalline biological molecules with temperature factors, correlated motions, and diffuse x-ray scattering.Observing the overall rocking motion of a protein in a crystalDetermination of ensemble-average pairwise root mean-square deviation from experimental B-factors.A-site residues move independently from P-site residues in all-atom molecular dynamics simulations of the 70S bacterial ribosome.Specific non-local interactions are not necessary for recovering native protein dynamics.iGNM 2.0: the Gaussian network model database for biomolecular structural dynamics.The maximum penalty criterion for ridge regression: application to the calibration of the force constant in elastic network models.Gaussian network model can be enhanced by combining solvent accessibility in proteins.X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals.Crystallographic analysis of ground and space thermostable T1 lipase crystal obtained via counter diffusion method approach.Multiscale Gaussian network model (mGNM) and multiscale anisotropic network model (mANM).Predicting the Flexibility Profile of Ribosomal RNAs.Flexibility-rigidity index for protein-nucleic acid flexibility and fluctuation analysis.BDB: databank of PDB files with consistent B-factors.
P2860
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P2860
All-atom contact model for understanding protein dynamics from crystallographic B-factors
description
article científic
@ca
article scientifique
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articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on April 2009
@en
vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
All-atom contact model for understanding protein dynamics from crystallographic B-factors
@en
All-atom contact model for und ...... om crystallographic B-factors.
@nl
type
label
All-atom contact model for understanding protein dynamics from crystallographic B-factors
@en
All-atom contact model for und ...... om crystallographic B-factors.
@nl
prefLabel
All-atom contact model for understanding protein dynamics from crystallographic B-factors
@en
All-atom contact model for und ...... om crystallographic B-factors.
@nl
P2860
P1433
P1476
All-atom contact model for understanding protein dynamics from crystallographic B-factors
@en
P2093
Rafael Brüschweiler
P2860
P304
P356
10.1016/J.BPJ.2009.01.011
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P577
2009-04-01T00:00:00Z