Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae
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Nucleosome-coupled expression differences in closely-related speciesHistone hypoacetylation-activated genes are repressed by acetyl-CoA- and chromatin-mediated mechanism.Group normalization for genomic data.A dynamic interplay of nucleosome and Msn2 binding regulates kinetics of gene activation and repression following stress.Quantitative test of the barrier nucleosome model for statistical positioning of nucleosomes up- and downstream of transcription start sitesNucleosome-depleted regions in cell-cycle-regulated promoters ensure reliable gene expression in every cell cycle.Promoter-proximal transcription factor binding is transcriptionally active when coupled with nucleosome repositioning in immediate vicinity.Bacterial nucleoid-associated protein uncouples transcription levels from transcription timing.RSC-dependent constructive and destructive interference between opposing arrays of phased nucleosomes in yeast.High-throughput sequencing reveals a simple model of nucleosome energetics.Heavy transcription of yeast genes correlates with differential loss of histone H2B relative to H4 and queued RNA polymerasesGlobal remodeling of nucleosome positions in C. elegans.Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters.Statistical Mechanics of Nucleosomes Constrained by Higher-Order Chromatin StructureDynamics of nucleosome invasion by DNA binding proteins.Functional roles of nucleosome stability and dynamics.Statistical mechanics of nucleosome ordering by chromatin-structure-induced two-body interactionsChromatin and transcription in yeastThe new nucleoporin: regulator of transcriptional repression and beyondThe ISW1 and CHD1 ATP-dependent chromatin remodelers compete to set nucleosome spacing in vivo.Genome-wide mapping of nucleosome positions in Saccharomyces cerevisiae in response to different nitrogen conditions.Protein kinase A and TORC1 activate genes for ribosomal biogenesis by inactivating repressors encoded by Dot6 and its homolog Tod6.Nucleosome positioning in Saccharomyces cerevisiae.Higher-order chromatin structure: bridging physics and biology.The yeast PHO5 promoter: from single locus to systems biology of a paradigm for gene regulation through chromatinNucleosome positioning in yeasts: methods, maps, and mechanisms.Dynamic changes in nucleosome occupancy are not predictive of gene expression dynamics but are linked to transcription and chromatin regulators.Nitrogen depletion in the fission yeast Schizosaccharomyces pombe causes nucleosome loss in both promoters and coding regions of activated genes.A genomic model of condition-specific nucleosome behavior explains transcriptional activity in yeast.Regulation of chaperone binding and nucleosome dynamics by key residues within the globular domain of histone H3.Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences.The SWI/SNF KlSnf2 subunit controls the glucose signaling pathway to coordinate glycolysis and glucose transport in Kluyveromyces lactis.Defining flexible vs. inherent promoter architectures: the importance of dynamics and environmental considerationsThe spectacular landscape of chromatin and ncRNAs under the Tico sunlight.
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P2860
Chromatin-dependent transcription factor accessibility rather than nucleosome remodeling predominates during global transcriptional restructuring in Saccharomyces cerevisiae
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 03 June 2009
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Chromatin-dependent transcript ...... ng in Saccharomyces cerevisiae
@en
Chromatin-dependent transcript ...... g in Saccharomyces cerevisiae.
@nl
type
label
Chromatin-dependent transcript ...... ng in Saccharomyces cerevisiae
@en
Chromatin-dependent transcript ...... g in Saccharomyces cerevisiae.
@nl
prefLabel
Chromatin-dependent transcript ...... ng in Saccharomyces cerevisiae
@en
Chromatin-dependent transcript ...... g in Saccharomyces cerevisiae.
@nl
P2860
P356
P1476
Chromatin-dependent transcript ...... ng in Saccharomyces cerevisiae
@en
P2093
Karl A Zawadzki
P2860
P304
P356
10.1091/MBC.E09-02-0111
P577
2009-06-03T00:00:00Z