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Automated identification of conserved synteny after whole-genome duplication

Automated identification of conserved synteny after whole-genome duplication

http://www.wikidata.org/entity/Q37287341

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Consequences of lineage-specific gene loss on functional evolution of surviving paralogs: ALDH1A and retinoic acid signaling in vertebrate genomes The genome of the platyfish, Xiphophorus maculatus, provides insights into evolutionary adaptation and several complex traits Nothing in Evolution Makes Sense Except in the Light of Genomics: Read-Write Genome Evolution as an Active Biological Process Inferring Orthologs: Open Questions and Perspectives Zebrafish as a Model to Study the Role of Peroxisome Proliferating-Activated Receptors in Adipogenesis and Obesity Control of mucin-type O-glycosylation: a classification of the polypeptide GalNAc-transferase gene family Systematic classification of vertebrate chemokines based on conserved synteny and evolutionary history Origin and loss of nested LRRTM/α-catenin genes during vertebrate evolution Roles of brca2 (fancd1) in oocyte nuclear architecture, gametogenesis, gonad tumors, and genome stability in zebrafish Selection of reliable biomarkers from PCR array analyses using relative distance computational model: methodology and proof-of-concept study Deep phylogenomics of a tandem-repeat galectin regulating appendicular skeletal pattern formation Evolutionary and developmental analysis reveals KANK genes were co-opted for vertebrate vascular development The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons The Evolution of the Secreted Regulatory Protein Progranulin A new model army: Emerging fish models to study the genomics of vertebrate Evo-Devo Evolution of the miR199-214 cluster and vertebrate skeletal development The cytochrome P450 genesis locus: the origin and evolution of animal cytochrome P450s MicroSyn: a user friendly tool for detection of microsynteny in a gene family Integrative view of α2,3-sialyltransferases (ST3Gal) molecular and functional evolution in deuterostomes: significance of lineage-specific losses The genome of the Gulf pipefish enables understanding of evolutionary innovations Molecular phylogeny and functional genomics of beta-galactoside alpha2,6-sialyltransferases that explain ubiquitous expression of st6gal1 gene in amniotes.Identification of an evolutionarily conserved regulatory element of the zebrafish col2a1a gene.Effect of IRS4 levels on PI 3-kinase signalling.Lineage-specific co-evolution of the Egf receptor/ligand signaling system.Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods.Functional effects of spinocerebellar ataxia type 13 mutations are conserved in zebrafish Kv3.3 channels Nme gene family evolutionary history reveals pre-metazoan origins and high conservation between humans and the sea anemone, Nematostella vectensis The vertebrate makorin ubiquitin ligase gene family has been shaped by large-scale duplication and retroposition from an ancestral gonad-specific, maternal-effect gene.A RAD-tag genetic map for the platyfish (Xiphophorus maculatus) reveals mechanisms of karyotype evolution among teleost fish.Geography of the circadian gene clock and photoperiodic response in western North American populations of the three-spined stickleback Gasterosteus aculeatus.SyMAP v3.4: a turnkey synteny system with application to plant genomes.Evolutionary divergence of the vertebrate TNFAIP8 gene family: Applying the spotted gar orthology bridge to understand ohnolog loss in teleosts Screening synteny blocks in pairwise genome comparisons through integer programming.Highly aneuploid zebrafish malignant peripheral nerve sheath tumors have genetic alterations similar to human cancers.New insights into the evolution of metazoan tyrosinase gene family.Histone deacetylase-4 is required during early cranial neural crest development for generation of the zebrafish palatal skeleton Fss/Tbx6 is required for central dermomyotome cell fate in zebrafish.Identification of distant Agouti-like sequences and re-evaluation of the evolutionary history of the Agouti-related peptide (AgRP).The evolution of cichlid fish egg-spots is linked with a cis-regulatory change.GASP/WFIKKN proteins: evolutionary aspects of their functions.

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Automated identification of conserved synteny after whole-genome duplication

http://www.wikidata.org/entity/Q37287341

description

article científic

@ca

article scientifique

@fr

articolo scientifico

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artigo científico

@pt

bilimsel makale

@tr

scientific article published on 22 May 2009

@en

vedecký článok

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vetenskaplig artikel

@sv

videnskabelig artikel

@da

vědecký článek

@cs

name

Automated identification of conserved synteny after whole-genome duplication

@en

Automated identification of conserved synteny after whole-genome duplication.

@nl

type

label

Automated identification of conserved synteny after whole-genome duplication

@en

Automated identification of conserved synteny after whole-genome duplication.

@nl

prefLabel

Automated identification of conserved synteny after whole-genome duplication

@en

Automated identification of conserved synteny after whole-genome duplication.

@nl

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Genome Research

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Automated identification of conserved synteny after whole-genome duplication

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John H Postlethwait

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John S Conery

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Julian M Catchen

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P2860

Two rounds of whole genome duplication in the ancestral vertebrate

Gene family evolution across 12 Drosophila genomes

Mapping and sequencing of structural variation from eight human genomes

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

The basic helix-loop-helix-PAS protein MOP9 is a brain-specific heterodimeric partner of circadian and hypoxia factors

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

Preservation of duplicate genes by complementary, degenerative mutations

Genome duplication, a trait shared by 22000 species of ray-finned fish

Amino acid substitution matrices from protein blocks

Asynchronous oscillations of two zebrafish CLOCK partners reveal differential clock control and function

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1497-1505

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scholarly article

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10.1101/GR.090480.108

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8

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19

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2009-05-22T00:00:00Z

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19465509

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