Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters. - Wikidata - wikimedia - TriplyDB

Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters.

Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters.

http://www.wikidata.org/entity/Q37354172

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Navigating Microbiological Food Safety in the Era of Whole-Genome Sequencing Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples.Comparative genomic analysis and virulence differences in closely related salmonella enterica serotype heidelberg isolates from humans, retail meats, and animals.Genome analysis and CRISPR typing of Salmonella enterica serovar Virchow.A Syst-OMICS Approach to Ensuring Food Safety and Reducing the Economic Burden of Salmonellosis.Genomic characterization of Salmonella Cerro ST367, an emerging Salmonella subtype in cattle in the United States.Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis Characterization of Vibrio parahaemolyticus clinical strains from Maryland (2012-2013) and comparisons to a locally and globally diverse V. parahaemolyticus strains by whole-genome sequence analysis.Concordance and discordance of sequence survey methods for molecular epidemiology Differential single nucleotide polymorphism-based analysis of an outbreak caused by Salmonella enterica serovar Manhattan reveals epidemiological details missed by standard pulsed-field gel electrophoresis Two Draft Genome Sequences of a New Serovar of Salmonella enterica, Serovar Lubbock.The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.Formal Comment to Pettengill: The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence.Characterization of the cytolethal distending toxin (typhoid toxin) in non-typhoidal Salmonella serovars.Contributions of P2- and P22-like prophages to understanding the enormous diversity and abundance of tailed bacteriophages.Genomic and Evolutionary Analysis of Two Salmonella enterica Serovar Kentucky Sequence Types Isolated from Bovine and Poultry Sources in North America.Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?Genome Sequences of Two Salmonella enterica Serovar Kentucky Isolates Recovered from Poultry Carcasses in the United States Multinational outbreak of travel-related Salmonella Chester infections in Europe, summers 2014 and 2015.Complete Genome and Methylome Sequences of Salmonella enterica subsp. enterica Serovars Typhimurium, Saintpaul, and Stanleyville from the SARA/SARB Collection.Integration host factor is important for biofilm formation by Salmonella enterica Enteritidis.Whole-genome single-nucleotide-polymorphism analysis for discrimination of Clostridium botulinum group I strains.The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica.Whole-genome comparative analysis of Salmonella enterica serovar Newport strains reveals lineage-specific divergence.Enrichment, Amplification, and Sequence-Based Typing of Salmonella enterica and Other Foodborne Pathogens.CRISPR Diversity and Microevolution in Clostridium difficile.Prophage Integrase Typing Is a Useful Indicator of Genomic Diversity in Salmonella enterica.The Typhi colonization factor (Tcf) is encoded by multiple non-typhoidal Salmonella serovars but exhibits a varying expression profile and interchanging contribution to intestinal colonization.Genome sequencing, annotation and analysis of Salmonella enterica sub species salamae strain DMA-1.Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms.Genome Sequences of Salmonella enterica subsp. enterica Serovar Kentucky Sequence Type 152 Isolated from Dairy Cows in the United States.SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation.Plant-microbe and abiotic factors influencing Salmonella survival and growth on alfalfa sprouts and Swiss chard microgreens.Rapid detection and serovar identification of common Salmonella enterica serovars in Canada using a new pyrosequencing assay.GET_PHYLOMARKERS, a Software Package to Select Optimal Orthologous Clusters for Phylogenomics and Inferring Pan-Genome Phylogenies, Used for a Critical Geno-Taxonomic Revision of the Genus Stenotrophomonas.Polyphyletic Nature of Salmonella enterica Serotype Derby and Lineage-Specific Host-Association Revealed by Genome-Wide Analysis.Genomic Diversity in Salmonella enterica New Insights Into Functions and Possible Applications of CRISPR-Cas System Phylogenetic and antimicrobial resistance gene analysis of Salmonella Typhimurium strains isolated in Brazil by whole genome sequencing High-resolution diffusion pattern of human infections by Salmonella enterica serovar Napoli in Northern Italy explained through phylogeography

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Phylogenetic diversity of the enteric pathogen Salmonella enterica subsp. enterica inferred from genome-wide reference-free SNP characters.

http://www.wikidata.org/entity/Q37354172

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article científic

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article scientifique

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articolo scientifico

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artigo científico

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bilimsel makale

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scientific article published on January 2013

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vetenskaplig artikel

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vědecký článek

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Phylogenetic diversity of the ...... reference-free SNP characters.

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Phylogenetic diversity of the ...... reference-free SNP characters.

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Phylogenetic diversity of the ...... reference-free SNP characters.

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Phylogenetic diversity of the ...... reference-free SNP characters.

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Phylogenetic diversity of the ...... reference-free SNP characters.

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Chris Wehnes

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Eric W Brown

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Errol Strain

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James B Pettengill

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Jeffrey S Karns

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Joann S Van Kessel

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Marc W Allard

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Ruth E Timme

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Steven M Musser

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P2860

Multilocus sequence typing as a replacement for serotyping in Salmonella enterica

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Genome sequencing in microfabricated high-density picolitre reactors

Foodborne illness acquired in the United States--major pathogens

Ray: simultaneous assembly of reads from a mix of high-throughput sequencing technologies

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

A rapid bootstrap algorithm for the RAxML Web servers

CRISPR typing and subtyping for improved laboratory surveillance of Salmonella infections

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scholarly article

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10.1093/GBE/EVT159

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11

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5

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Rodolphe Barrangou

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Salmonella enterica

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