Stochastic dynamics and non-equilibrium thermodynamics of a bistable chemical system: the Schlögl model revisited
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Stochastic transitions in a bistable reaction system on the membraneA scalable computational framework for establishing long-term behavior of stochastic reaction networkscuTauLeaping: a GPU-powered tau-leaping stochastic simulator for massive parallel analyses of biological systemsBistability: requirements on cell-volume, protein diffusion, and thermodynamicsSelf-assembled wiggling nano-structures and the principle of maximum entropy production.Stochastic bistability and bifurcation in a mesoscopic signaling system with autocatalytic kinase.Stochastic E2F activation and reconciliation of phenomenological cell-cycle models.Computational Cellular Dynamics Based on the Chemical Master Equation: A Challenge for Understanding Complexity.Optimal homeostasis necessitates bistable controlProbability landscape of heritable and robust epigenetic state of lysogeny in phage lambda.Non-equilibrium phase transition in mesoscopic biochemical systems: from stochastic to nonlinear dynamics and beyond.Protein abundance may regulate sensitivity to external cues in polarized cellsOn a theory of stability for nonlinear stochastic chemical reaction networks.Bottom-up construction of in vitro switchable memories.Adaptively biased sequential importance sampling for rare events in reaction networks with comparison to exact solutions from finite buffer dCME method.The chemical master equation approach to nonequilibrium steady-state of open biochemical systems: linear single-molecule enzyme kinetics and nonlinear biochemical reaction networks.Multi-scale modeling in biology: how to bridge the gaps between scales?Processes on the emergent landscapes of biochemical reaction networks and heterogeneous cell population dynamics: differentiation in living mattersEmergent chemical behavior in variable-volume protocells.Optimal design of stimulus experiments for robust discrimination of biochemical reaction networks.Efficient stochastic simulation of chemical kinetics networks using a weighted ensemble of trajectories.Type of noise defines global attractors in bistable molecular regulatory systems.A minimal model of burst-noise induced bistability.Toggle switch: noise determines the winning gene.Statistically testing the validity of analytical and computational approximations to the chemical master equation.A relative entropy rate method for path space sensitivity analysis of stationary complex stochastic dynamics.Distribution of melting times and critical droplet in kinetic Monte Carlo and molecular dynamics.Non-invasive estimation of dissipation from non-equilibrium fluctuations in chemical reactions.Stochastic bifurcation, slow fluctuations, and bistability as an origin of biochemical complexity.Entropy production selects nonequilibrium states in multistable systems.Efficient stochastic simulation of biochemical reactions with noise and delays.Stochastic simulation of reaction-diffusion systems: A fluctuating-hydrodynamics approach.Parallel replica dynamics method for bistable stochastic reaction networks: Simulation and sensitivity analysis.Master equation approach to single oligomeric enzyme catalysis: mechanically controlled further catalysis.Extending the Multi-level Method for the Simulation of Stochastic Biological Systems.The limiting dynamics of a bistable molecular switch with and without noise.Roles of factorial noise in inducing bimodal gene expression.Stochastic phenotype transition of a single cell in an intermediate region of gene state switching.Stochastic linear multistep methods for the simulation of chemical kinetics.Path integrals and large deviations in stochastic hybrid systems.
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Stochastic dynamics and non-equilibrium thermodynamics of a bistable chemical system: the Schlögl model revisited
description
article científic
@ca
article scientifique
@fr
articolo scientifico
@it
artigo científico
@pt
bilimsel makale
@tr
scientific article published on 18 December 2008
@en
vedecký článok
@sk
vetenskaplig artikel
@sv
videnskabelig artikel
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vědecký článek
@cs
name
Stochastic dynamics and non-eq ...... m: the Schlögl model revisited
@en
Stochastic dynamics and non-eq ...... : the Schlögl model revisited.
@nl
type
label
Stochastic dynamics and non-eq ...... m: the Schlögl model revisited
@en
Stochastic dynamics and non-eq ...... : the Schlögl model revisited.
@nl
prefLabel
Stochastic dynamics and non-eq ...... m: the Schlögl model revisited
@en
Stochastic dynamics and non-eq ...... : the Schlögl model revisited.
@nl
P2860
P356
P1476
Stochastic dynamics and non-eq ...... m: the Schlögl model revisited
@en
P2093
Melissa Vellela
P2860
P304
P356
10.1098/RSIF.2008.0476
P577
2008-12-18T00:00:00Z