Centrifuge: rapid and sensitive classification of metagenomic sequences.
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Tracking microbial colonization in fecal microbiota transplantation experiments via genome-resolved metagenomics.A portable system for rapid bacterial composition analysis using a nanopore-based sequencer and laptop computer.BusyBee Web: metagenomic data analysis by bootstrapped supervised binning and annotation.A Metagenomic Approach to Cyanobacterial Genomics.VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic dataCritical points for an accurate human genome analysis.Metagenomics analysis of red blood cell and fresh-frozen plasma units.Challenging a bioinformatic tool's ability to detect microbial contaminants using in silico whole genome sequencing data.TaxMapper: an analysis tool, reference database and workflow for metatranscriptome analysis of eukaryotic microorganisms.A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.Polar solar panels: Arctic and Antarctic microbiomes display similar taxonomic profiles.Computational profiling of the gut-brain axis: microflora dysbiosis insights to neurological disorders.Identifying Corneal Infections in Formalin-Fixed Specimens Using Next Generation Sequencing.A review of methods and databases for metagenomic classification and assembly.Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise.Method for the Identification of Taxon-Specific k-mers from Chloroplast Genome: A Case Study on Tomato Plant (Solanum lycopersicum).MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies.Flexible metagenome analysis using the MGX framework.Unbiased Strain-Typing of Arbovirus Directly from Mosquitoes Using Nanopore Sequencing: A Field-forward Biosurveillance Protocol.taxMaps: comprehensive and highly accurate taxonomic classification of short-read data in reasonable time.Aggressive natural killer-cell leukemia mutational landscape and drug profiling highlight JAK-STAT signaling as therapeutic target.Methods for exploring the plant tree of life.Algorithms and strategies in short-read shotgun metagenomic reconstruction of plant communities.When old metagenomic data meet newly sequenced genomes, a case study.MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs.Assembly of 913 microbial genomes from metagenomic sequencing of the cow rumen.BLAST-based validation of metagenomic sequence assignments.viGEN: An Open Source Pipeline for the Detection and Quantification of Viral RNA in Human Tumors.Bioinformatics for Microbiome Research: Concepts, Strategies, and AdvancesMass Azithromycin Distribution and Community Microbiome: A Cluster-Randomized TrialMetagenomic Composition Analysis of an Ancient Sequenced Polar Bear Jawbone from SvalbardLimited Correlation of Shotgun Metagenomics Following Host Depletion and Routine Diagnostics for Viruses and Bacteria in Low Concentrated Surrogate and Clinical SamplesWhat we can see from very small size sample of metagenomic sequencesDietary Cows' Milk Protein A1 Beta-Casein Increases the Incidence of T1D in NOD MicePlaScope: a targeted approach to assess the plasmidome from genome assemblies at the species levelSynthetic microbe communities provide internal reference standards for metagenome sequencing and analysisReal-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devicesEvaluating the Information Content of Shallow Shotgun Metagenomics
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Centrifuge: rapid and sensitive classification of metagenomic sequences.
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 17 October 2016
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vedecký článok
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vetenskaplig artikel
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videnskabelig artikel
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vědecký článek
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name
Centrifuge: rapid and sensitive classification of metagenomic sequences.
@en
Centrifuge: rapid and sensitive classification of metagenomic sequences.
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type
label
Centrifuge: rapid and sensitive classification of metagenomic sequences.
@en
Centrifuge: rapid and sensitive classification of metagenomic sequences.
@nl
prefLabel
Centrifuge: rapid and sensitive classification of metagenomic sequences.
@en
Centrifuge: rapid and sensitive classification of metagenomic sequences.
@nl
P2860
P50
P356
P1433
P1476
Centrifuge: rapid and sensitive classification of metagenomic sequences.
@en
P2093
P2860
P304
P356
10.1101/GR.210641.116
P577
2016-10-17T00:00:00Z