Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis.
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A model of proteostatic energy cost and its use in analysis of proteome trends and sequence evolutionEnergy efficiency trade-offs drive nucleotide usage in transcribed regionsAnalytic markovian rates for generalized protein structure evolution.Large-scale comparative genomic ranking of taxonomically restricted genes (TRGs) in bacterial and archaeal genomes.Evolutionary systems biology of amino acid biosynthetic cost in yeast.Economical evolution: microbes reduce the synthetic cost of extracellular proteins.Temperature adaptation at homologous sites in proteins from nine thermophile-mesophile species pairs.Evolution of complete proteomes: guanine-cytosine pressure, phylogeny and environmental influences blend the proteomic architecture.Extraordinarily adaptive properties of the genetically encoded amino acids.Effects of varying nitrogen sources on amino acid synthesis costs in Arabidopsis thaliana under different light and carbon-source conditions.Gene expression levels are correlated with synonymous codon usage, amino acid composition, and gene architecture in the red flour beetle, Tribolium castaneumCharacterization of parasite-specific indels and their proposed relevance for selective anthelminthic drug targeting.Acquisition of nutrients by Chlamydiae: unique challenges of living in an intracellular compartmentGlobal survey of mRNA levels and decay rates of Chlamydia trachomatis trachoma and lymphogranuloma venereum biovars.A novel approach for determining environment-specific protein costs: the case of Arabidopsis thaliana.Tissue Specific Expression Levels of Apoptosis Involved Genes Have Correlations with Codon and Amino Acid Usage.Chlorobaculum tepidum Modulates Amino Acid Composition in Response to Energy Availability, as Revealed by a Systematic Exploration of the Energy Landscape of Phototrophic Sulfur Oxidation.Selection for energy efficiency drives strand-biased gene distribution in prokaryotes.Influence of hydrophilic amino acids and GC-content on expression of recombinant proteins used in vaccines against foot-and-mouth disease virus in Escherichia coli.Variation in synonymous codon usage in Paenibacillus sp. 32O-W genome.Metabolic and translational efficiency in microbial organisms.Thermophilic adaptation in prokaryotes is constrained by metabolic costs of proteostasis.Vitamin and Amino Acid Auxotrophy in Anaerobic Consortia Operating under Methanogenic Conditions.Superoxide dismutase 1 is positively selected to minimize protein aggregation in great apes.Comparative investigation of the various determinants that influence the codon and amino acid usage patterns in the genus Bifidobacterium.Biosynthetic energy cost of potentially highly expressed proteins vary with niche in selected actinobacteria.Metabolic adaptations of Pseudomonas aeruginosa during cystic fibrosis chronic lung infections.Metabolic costs of amino acid and protein production in Escherichia coli.The social network of microorganisms - how auxotrophies shape complex communities.Protein elemental sparing and codon usage bias are correlated among bacteria.
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P2860
Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis.
description
article científic
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article scientifique
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articolo scientifico
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artigo científico
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bilimsel makale
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scientific article published on 05 June 2006
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vedecký článok
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vetenskaplig artikel
@sv
videnskabelig artikel
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vědecký článek
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name
Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis.
@en
Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis.
@nl
type
label
Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis.
@en
Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis.
@nl
prefLabel
Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis.
@en
Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis.
@nl
P2093
P2860
P356
P1476
Amino acid cost and codon-usage biases in 6 prokaryotic genomes: a whole-genome analysis.
@en
P2093
Dan E Krane
Douglas W Raiford
Esley M Heizer
Michael L Raymer
Robert V Miller
Travis E Doom
P2860
P304
P356
10.1093/MOLBEV/MSL029
P577
2006-06-05T00:00:00Z