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Bacterial transcriptomics: what is beyond the RNA horiz-ome?

Bacterial transcriptomics: what is beyond the RNA horiz-ome?

http://www.wikidata.org/entity/Q37916225

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Integrative "omics"-approach discovers dynamic and regulatory features of bacterial stress responses Genome-wide transcription start site profiling in biofilm-grown Burkholderia cenocepacia J2315 Virulence and Fitness Determinants of Uropathogenic Escherichia coli Single-cell RNA-seq: advances and future challenges Experimental approaches to identify small RNAs and their diverse roles in bacteria--what we have learnt in one decade of MicA research RNA-Seq of Bacillus licheniformis: active regulatory RNA features expressed within a productive fermentation A genome-wide survey of highly expressed non-coding RNAs and biological validation of selected candidates in Agrobacterium tumefaciens Comparative "-omics" in Mycoplasma pneumoniae Clinical Isolates Reveals Key Virulence Factors Comparative Transcriptomic Approaches Exploring Contamination Stress Tolerance in Salix sp. Reveal the Importance for a Metaorganismal de Novo Assembly Approach for Nonmodel Plants Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique Omics strategies for revealing Yersinia pestis virulence Surface proteome analysis and characterization of surface cell antigen (Sca) or autotransporter family of Rickettsia typhi.The Pseudomonas aeruginosa transcriptome in planktonic cultures and static biofilms using RNA sequencing.Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data.An empirical strategy to detect bacterial transcript structure from directional RNA-seq transcriptome data.Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.Construction and verification of the transcriptional regulatory response network of Streptococcus mutans upon treatment with the biofilm inhibitor carolacton Genome-wide mRNA processing in methanogenic archaea reveals post-transcriptional regulation of ribosomal protein synthesis.Genome-wide identification of transcriptional start sites in the plant pathogen Pseudomonas syringae pv. tomato str. DC3000.Contribution of transcriptomics to systems-level understanding of methanogenic Archaea.Unravelling the transcriptome profile of the Swine respiratory tract mycoplasmas.Bacterial translational regulations: high diversity between all mRNAs and major role in gene expression.Overlapping genes: a window on gene evolvability.Comparative genomics and transcriptomics of trait-gene association Multilevel comparative analysis of the contributions of genome reduction and heat shock to the Escherichia coli transcriptome.HrpA, an RNA helicase involved in RNA processing, is required for mouse infectivity and tick transmission of the Lyme disease spirochete.Distinguishing between productive and abortive promoters using a random forest classifier in Mycoplasma pneumoniae.Refactoring the nitrogen fixation gene cluster from Klebsiella oxytoca Term-seq reveals abundant ribo-regulation of antibiotics resistance in bacteria.Changes in protein abundance are observed in bacterial isolates from a natural host Genome-wide transcriptional responses of Alteromonas naphthalenivorans SN2 to contaminated seawater and marine tidal flat sediment.Loss of Conserved Noncoding RNAs in Genomes of Bacterial Endosymbionts.EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes.Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling.Transcriptome Sequencing Reveals Wide Expression Reprogramming of Basal and Unknown Genes in Leptospira biflexa Biofilms Insights into the Mechanisms of Basal Coordination of Transcription Using a Genome-Reduced Bacterium.Ultra deep sequencing of Listeria monocytogenes sRNA transcriptome revealed new antisense RNAs.Perspectives on the automatic design of regulatory systems for synthetic biology.Current challenges in bacterial transcriptomics.Exploitation of physiology and metabolomics to identify pneumococcal vaccine candidates.

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Bacterial transcriptomics: what is beyond the RNA horiz-ome?

http://www.wikidata.org/entity/Q37916225

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artikel ilmiah

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Bacterial transcriptomics: what is beyond the RNA horiz-ome?

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Bacterial transcriptomics: what is beyond the RNA horiz-ome?

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type

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Bacterial transcriptomics: what is beyond the RNA horiz-ome?

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Bacterial transcriptomics: what is beyond the RNA horiz-ome?

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Bacterial transcriptomics: what is beyond the RNA horiz-ome?

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Bacterial transcriptomics: what is beyond the RNA horiz-ome?

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Nature Reviews Microbiology

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Bacterial transcriptomics: what is beyond the RNA horiz-ome?

@en

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Eva Yus

http://www.w3.org/2001/XMLSchema#string

Luis Serrano

http://www.w3.org/2001/XMLSchema#string

Marc Güell

http://www.w3.org/2001/XMLSchema#string

Maria Lluch-Senar

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P2860

A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti

Deep sequencing analysis of small noncoding RNA and mRNA targets of the global post-transcriptional regulator, Hfq

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

The sigma70 family of sigma factors

Determinant of cistron specificity in bacterial ribosomes

Emerging features of mRNA decay in bacteria.

Regulatory RNAs in bacteria

RNA-Seq: a revolutionary tool for transcriptomics

Termination and antitermination: RNA polymerase runs a stop sign

RNomics in Escherichia coli detects new sRNA species and indicates parallel transcriptional output in bacteria

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658-669

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scholarly article

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10.1038/NRMICRO2620

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9

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9

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Maria Lluch-Senar

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2011-08-12T00:00:00Z

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51566628

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21836626

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