Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph. - Wikidata - wikimedia - TriplyDB

Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph.

Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph.

http://www.wikidata.org/entity/Q37970068

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Challenges, Solutions, and Quality Metrics of Personal Genome Assembly in Advancing Precision Medicine Assembly, Assessment, and Availability of De novo Generated Eukaryotic Transcriptomes Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations Cassava genome from a wild ancestor to cultivated varieties Next-generation sequence assembly: four stages of data processing and computational challenges Comprehensive insights in the Mycobacterium avium subsp. paratuberculosis genome using new WGS data of sheep strain JIII-386 from Germany Complete Sequence Construction of the Highly Repetitive Ribosomal RNA Gene Repeats in Eukaryotes Using Whole Genome Sequence Data.Why assembling plant genome sequences is so challenging The combination of direct and paired link graphs can boost repetitive genome assembly.GABenchToB: a genome assembly benchmark tuned on bacteria and benchtop sequencers.COPE: an accurate k-mer-based pair-end reads connection tool to facilitate genome assembly.De novo transcriptome sequence assembly and analysis of RNA silencing genes of Nicotiana benthamiana.Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold.Towards decrypting cryptobiosis--analyzing anhydrobiosis in the tardigrade Milnesium tardigradum using transcriptome sequencing.A method enabling high-throughput sequencing of human cytomegalovirus complete genomes from clinical isolates Heterozygous genome assembly via binary classification of homologous sequence MetLab: An In Silico Experimental Design, Simulation and Analysis Tool for Viral Metagenomics Studies.BASE: a practical de novo assembler for large genomes using long NGS reads.Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist's Perspective - Not Only Size Matters!Reference-independent comparative metagenomics using cross-assembly: crAss.GFinisher: a new strategy to refine and finish bacterial genome assemblies.Assembly of long error-prone reads using de Bruijn graphs.mPUMA: a computational approach to microbiota analysis by de novo assembly of operational taxonomic units based on protein-coding barcode sequences.The Promises and Challenges of Genomic Studies of Human Centromeres.Using metagenomics to investigate human and environmental resistomes.Assessing the Impact of Assemblers on Virus Detection in a De Novo Metagenomic Analysis Pipeline.Comparative analysis of de novo assemblers for variation discovery in personal genomes.Improving ancient DNA genome assembly.How Single Molecule Real-Time Sequencing and Haplotype Phasing Have Enabled Reference-Grade Diploid Genome Assembly of Wine Grapes.Alignment-free sequence comparison: benefits, applications, and tools.Orthology Guided Assembly in highly heterozygous crops: creating a reference transcriptome to uncover genetic diversity in Lolium perenne.Comparative analysis of de novo transcriptome assembly.De Novo Transcriptome Assembly in Polyploid Species.LRSim: A Linked-Reads Simulator Generating Insights for Better Genome Partitioning.Pool deconvolution approach for high-throughput gene mining from Bacillus thuringiensis.Automated NMR resonance assignments and structure determination using a minimal set of 4D spectra.Genomic repeats, misassembly and reannotation: a case study with long-read resequencing of Porphyromonas gingivalis reference strains.A Comprehensive Study of De Novo Genome Assemblers: Current Challenges and Future Prospective.Ten steps to get started in Genome Assembly and Annotation

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Comparison of the two major classes of assembly algorithms: overlap-layout-consensus and de-bruijn-graph.

http://www.wikidata.org/entity/Q37970068

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article scientifique

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Comparison of the two major cl ...... consensus and de-bruijn-graph.

@en

Comparison of the two major cl ...... consensus and de-bruijn-graph.

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type

label

Comparison of the two major cl ...... consensus and de-bruijn-graph.

@en

Comparison of the two major cl ...... consensus and de-bruijn-graph.

@nl

prefLabel

Comparison of the two major cl ...... consensus and de-bruijn-graph.

@en

Comparison of the two major cl ...... consensus and de-bruijn-graph.

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Briefings in functional genomics

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Comparison of the two major cl ...... consensus and de-bruijn-graph.

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Bicheng Yang

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Binghang Liu

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Desheng Mu

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Hao Zhang

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Jianying Yuan

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Jun Gan

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Nan Li

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Yanxiang Chen

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Yujian Shi

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Zhenyu Li

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25-37

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10.1093/BFGP/ELR035

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1

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11

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51902612

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22184334

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