From a melt of rings to chromosome territories: the role of topological constraints in genome folding.
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Chromatin loops as allosteric modulators of enhancer-promoter interactionsHigh-quality genome (re)assembly using chromosomal contact data.In search of the determinants of enhancer-promoter interaction specificity.The 4D nucleome: Evidence for a dynamic nuclear landscape based on co-aligned active and inactive nuclear compartments.Fractal globules: a new approach to artificial molecular machinesReprogramming of fibroblast nuclei in cloned bovine embryos involves major structural remodeling with both striking similarities and differences to nuclear phenotypes of in vitro fertilized embryosInfluence of the Solvent Quality on Ring Polymer Dimensions.Large Scale Chromosome Folding Is Stable against Local Changes in Chromatin Structure.Quantified effects of chromosome-nuclear envelope attachments on 3D organization of chromosomesA Looping-Based Model for Quenching Repression.Perspectives: using polymer modeling to understand the formation and function of nuclear compartments.Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach.The 3D Genome as Moderator of Chromosomal Communication.Self-Similar Conformations and Dynamics in Entangled Melts and Solutions of Nonconcatenated Ring PolymersA topologically driven glass in ring polymers.Super-resolution imaging reveals distinct chromatin folding for different epigenetic states.Spatial organization of chromatin domains and compartments in single chromosomesSystems-level chromosomal parameters represent a suprachromosomal basis for the non-random chromosomal arrangement in human interphase nuclei.Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cellsNanoparticle Motion in Entangled Melts of Linear and Nonconcatenated Ring Polymers.Modeling chromosomes: Beyond pretty pictures.Celebrating Soft Matter's 10th Anniversary: Topology matters: structure and dynamics of ring polymers.Physical properties of the chromosomes and implications for development.FISH-ing for captured contacts: towards reconciling FISH and 3C.Flory theory of randomly branched polymers.Contact Statistics Highlight Distinct Organizing Principles of Proteins and RNASingle-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition.Extruding Loops to Make Loopy Globules?Ensemble View of RNAs and Proteins: Loops, Knots, Territories, and Evolution.Torque-winding interdependence for a flexible polymer chain wound around a cylinder in the presence of obstacles.A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.TAD-free analysis of architectural proteins and insulators.Combined collapse by bridging and self-adhesion in a prototypical polymer model inspired by the bacterial nucleoid.Segment-scale, force-level theory of mesoscopic dynamic localization and entropic elasticity in entangled chain polymer liquids.Chromosome-nuclear envelope attachments affect interphase chromosome territories and entanglement.Viscoelasticity of model interphase chromosomes.Adaptive resolution simulation of oligonucleotides.Anisotropic effective interactions and stack formation in mixtures of semiflexible ring polymers.Antipolar and Anticlinic Mesophase Order in Chromatin Induced by Nucleosome Polarity and Chirality Correlations.Anomalous diffusion in fractal globules.
P2860
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P2860
From a melt of rings to chromosome territories: the role of topological constraints in genome folding.
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article científic
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article scientifique
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articol științific
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articolo scientifico
@it
artigo científico
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artigo científico
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artigo científico
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artikel ilmiah
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artikull shkencor
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artículo científico
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From a melt of rings to chromo ...... constraints in genome folding.
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type
label
From a melt of rings to chromo ...... constraints in genome folding.
@en
prefLabel
From a melt of rings to chromo ...... constraints in genome folding.
@en
P2093
P356
P1476
From a melt of rings to chromo ...... constraints in genome folding
@en
P2093
Jonathan D Halverson
Kurt Kremer
P304
P356
10.1088/0034-4885/77/2/022601
P407
P577
2014-01-28T00:00:00Z