Scaffolding and validation of bacterial genome assemblies using optical restriction maps.
about
Assisted assembly: how to improve a de novo genome assembly by using related speciesComparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease controlEnhanced de novo assembly of high throughput pyrosequencing data using whole genome mappingA single molecule scaffold for the maize genome.Finishing genomes with limited resources: lessons from an ensemble of microbial genomes.OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assemblyGenomic characterization of the Yersinia genusGenome sequence of naturally competent Aggregatibacter actinomycetemcomitans serotype a strain D7S-1Complete genome sequence of Enterococcus mundtii QU 25, an efficient L-(+)-lactic acid-producing bacterium.Optically mapping multiple bacterial genomes simultaneously in a single run.SIS: a program to generate draft genome sequence scaffolds for prokaryotes.AGORA: Assembly Guided by Optical Restriction AlignmentRapid genome mapping in nanochannel arrays for highly complete and accurate de novo sequence assembly of the complex Aegilops tauschii genome.Genome assembly reborn: recent computational challengesHyDA-Vista: towards optimal guided selection of k-mer size for sequence assembly.ALLMAPS: robust scaffold ordering based on multiple maps.Optical mapping in plant comparative genomicsEfficient and scalable scaffolding using optical restriction maps.BESST--efficient scaffolding of large fragmented assemblies.Opera: reconstructing optimal genomic scaffolds with high-throughput paired-end sequencesMisassembly detection using paired-end sequence reads and optical mapping dataA novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumanniiNoise reduction in single time frame optical DNA mapsGetting trichy: tools and approaches to interrogating Trichomonas vaginalis in a post-genome worldComplete Genome Sequence of the Attenuated Corynebacterium pseudotuberculosis Strain T1Genome mapping on nanochannel arrays for structural variation analysis and sequence assembly.De novo assembly of short sequence reads.Computational methods for optical mapping.Mapping the human reference genome's missing sequence by three-way admixture in Latino genomes.Complete Genome Sequence of Campylobacter concisus ATCC 33237T and Draft Genome Sequences for an Additional Eight Well-Characterized C. concisus Strains.A spectral algorithm for fast de novo layout of uncorrected long nanopore reads.OMBlast: alignment tool for optical mapping using a seed-and-extend approach.New Generations: Sequencing Machines and Their Computational Challenges.OPTIMA: sensitive and accurate whole-genome alignment of error-prone genomic maps by combinatorial indexing and technology-agnostic statistical analysis.Maligner: a fast ordered restriction map aligner.Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome.Single-Molecule Real-Time Sequencing Combined with Optical Mapping Yields Completely Finished Fungal Genome.Complete genome sequencing of Pandoraea pnomenusa RB38 and Molecular Characterization of Its N-acyl homoserine lactone synthase gene ppnI.Genome sequence of a serotype b non-JP2 aggregatibacter actinomycetemcomitans strain, ANH9381, from a periodontally healthy individual.Genomic analysis of Pseudomonas aeruginosa PA96, the host of carbapenem resistance plasmid pOZ176.
P2860
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P2860
Scaffolding and validation of bacterial genome assemblies using optical restriction maps.
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年学术文章
@wuu
2008年学术文章
@zh-cn
2008年学术文章
@zh-hans
2008年学术文章
@zh-my
2008年学术文章
@zh-sg
2008年學術文章
@yue
2008年學術文章
@zh
2008年學術文章
@zh-hant
name
Scaffolding and validation of bacterial genome assemblies using optical restriction maps.
@en
type
label
Scaffolding and validation of bacterial genome assemblies using optical restriction maps.
@en
prefLabel
Scaffolding and validation of bacterial genome assemblies using optical restriction maps.
@en
P2860
P356
P1433
P1476
Scaffolding and validation of bacterial genome assemblies using optical restriction maps.
@en
P2093
Niranjan Nagarajan
Timothy D Read
P2860
P304
P356
10.1093/BIOINFORMATICS/BTN102
P407
P50
P577
2008-03-20T00:00:00Z