An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments. - Wikidata - wikimedia - TriplyDB

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.

http://www.wikidata.org/entity/Q38287394

about

Genomic convergence among ERRα, PROX1, and BMAL1 in the control of metabolic clock outputs PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth The program of gene transcription for a single differentiating cell type during sporulation in Bacillus subtilis Cistrome: an integrative platform for transcriptional regulation studies The diversity and evolution of cell cycle regulation in alpha-proteobacteria: a comparative genomic analysis MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes From the Cover: Location analysis of estrogen receptor alpha target promoters reveals that FOXA1 defines a domain of the estrogen response SIRT7 links H3K18 deacetylation to maintenance of oncogenic transformation Erralpha and Gabpa/b specify PGC-1alpha-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription Ultraconserved elements: analyses of dosage sensitivity, motifs and boundaries A survey of DNA motif finding algorithms Scoring functions for transcription factor binding site prediction Conserved transcription factor binding sites of cancer markers derived from primary lung adenocarcinoma microarrays Genome-wide mapping of the cohesin complex in the yeast Saccharomyces cerevisiae Identifying combinatorial regulation of transcription factors and binding motifs Position specific variation in the rate of evolution in transcription factor binding sites Limitations and potentials of current motif discovery algorithms.Human promoter genomic composition demonstrates non-random groupings that reflect general cellular function.Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination.Identification of RNA-protein interaction networks using PAR-CLIP A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques Gene Expression Profiling of the Cellular Transcriptional Network Regulated by Alpha/Beta Interferon and Its Partial Attenuation by the Hepatitis C Virus Nonstructural 5A Protein Comparative genomics of small RNA regulatory pathway components in vector mosquitoes Oxidative stress-activated zinc cluster protein Stb5 has dual activator/repressor functions required for pentose phosphate pathway regulation and NADPH production.Transcriptional regulatory code of a eukaryotic genome.Mapping of transcription factor binding regions in mammalian cells by ChIP: comparison of array- and sequencing-based technologies Origin and spread of de novo genes in Drosophila melanogaster populations The enhancer landscape during early neocortical development reveals patterns of dense regulation and co-option Transcription dynamically patterns the meiotic chromosome-axis interface MISCORE: a new scoring function for characterizing DNA regulatory motifs in promoter sequences ChIP-seq: advantages and challenges of a maturing technology Epigenetic methodologies for behavioral scientists.Statistical approaches to use a model organism for regulatory sequences annotation of newly sequenced species MotifLab: a tools and data integration workbench for motif discovery and regulatory sequence analysis.ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data Models incorporating chromatin modification data identify functionally important p53 binding sites SIOMICS: a novel approach for systematic identification of motifs in ChIP-seq data.Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data.

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P2860

An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.

http://www.wikidata.org/entity/Q38287394

description

2002 nî lūn-bûn

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2002年の論文

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2002年学术文章

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2002年学术文章

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2002年学术文章

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2002年学术文章

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2002年学术文章

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2002年學術文章

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2002年學術文章

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2002年學術文章

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Nature Biotechnology

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An algorithm for finding prote ...... tation microarray experiments.

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Douglas L Brutlag

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Jun S Liu

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X Shirley Liu

http://www.w3.org/2001/XMLSchema#string

P2860

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association.

Two DNA-binding factors recognize specific sequences at silencers, upstream activating sequences, autonomously replicating sequences, and telomeres in Saccharomyces cerevisiae

Genome-wide location and function of DNA binding proteins

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

Serial regulation of transcriptional regulators in the yeast cell cycle

The yeast STE12 protein binds to the DNA sequence mediating pheromone induction.

Building a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis.

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835-839

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scholarly article

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10.1038/NBT717

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8

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20

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12101404

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