Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities.
about
Bayesian non-negative factor analysis for reconstructing transcription factor mediated regulatory networksCompensations for diminished terminal oxidase activity in Escherichia coli: cytochrome bd-II-mediated respiration and glutamate metabolismReverse engineering and identification in systems biology: strategies, perspectives and challengesLearning transcriptional regulatory relationships using sparse graphical modelsA visual data mining tool that facilitates reconstruction of transcription regulatory networks.Modeling nonlinear gene regulatory networks from time series gene expression data.A dynamic network of transcription in LPS-treated human subjects.STARNET 2: a web-based tool for accelerating discovery of gene regulatory networks using microarray co-expression dataReconstructing transcriptional regulatory networks through genomics data.An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis.A mathematical model of the sterol regulatory element binding protein 2 cholesterol biosynthesis pathway.Ultradian cortisol pulsatility encodes a distinct, biologically important signal.Extracting regulator activity profiles by integration of de novo motifs and expression data: characterizing key regulators of nutrient depletion responses in Streptomyces coelicolor.Hierarchical Bayesian modelling of gene expression time series across irregularly sampled replicates and clusters.Nanostructured gold dsDNA sensor for early detection of breast cancer by beta protein 1 (BP1)On the inconsistency of ℓ 1-penalised sparse precision matrix estimationTIGERi: modeling and visualizing the responses to perturbation of a transcription factor network.Using temporal correlation in factor analysis for reconstructing transcription factor activities.Modelling transcriptional regulation with a mixture of factor analyzers and variational Bayesian expectation maximization.CydDC-mediated reductant export in Escherichia coli controls the transcriptional wiring of energy metabolism and combats nitrosative stress.Analysis of the bacterial response to Ru(CO)3Cl(Glycinate) (CORM-3) and the inactivated compound identifies the role played by the ruthenium compound and reveals sulfur-containing species as a major target of CORM-3 action.Reconstructing transcription factor activities in hierarchical transcription network motifs.An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network.Analysis of transcript changes in a heme-deficient mutant of Escherichia coli in response to CORM-3 [Ru(CO)3Cl(glycinate)].Protein kinase C regulates late cell cycle-dependent gene expression.Adaptation of anaerobic cultures of Escherichia coli K-12 in response to environmental trimethylamine-N-oxide.Transcript profiling and inference of Escherichia coli K-12 ArcA activity across the range of physiologically relevant oxygen concentrations.Ru(CO)3Cl(Glycinate) (CORM-3): a carbon monoxide-releasing molecule with broad-spectrum antimicrobial and photosensitive activities against respiration and cation transport in Escherichia coliSystems analysis of transcription factor activities in environments with stable and dynamic oxygen concentrations.Efficient Inference for Sparse Latent Variable Models of Transcriptional Regulation.Peroxynitrite toxicity in Escherichia coli K12 elicits expression of oxidative stress responses and protein nitration and nitrosylationSparse Regulatory Networks.Hybrid regulatory models: a statistically tractable approach to model regulatory network dynamics.Determination of the Escherichia coli S-nitrosoglutathione response network using integrated biochemical and systems analysis.Transcriptome and proteome dynamics in chemostat culture reveal how Campylobacter jejuni modulates metabolism, stress responses and virulence factors upon changes in oxygen availability.The Broad-Spectrum Antimicrobial Potential of [Mn(CO)4(S2CNMe(CH2CO2H))], a Water-Soluble CO-Releasing Molecule (CORM-401): Intracellular Accumulation, Transcriptomic and Statistical Analyses, and Membrane Polarization.Transition of Escherichia coli from aerobic to micro-aerobic conditions involves fast and slow reacting regulatory components.Carbon monoxide-releasing antibacterial molecules target respiration and global transcriptional regulators.Uncovering Transcriptional Regulatory Networks by Sparse Bayesian Factor ModelGaussian Process Inference for Differential Equation Models of Transcriptional Regulation
P2860
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P2860
Probabilistic inference of transcription factor concentrations and gene-specific regulatory activities.
description
2006 nî lūn-bûn
@nan
2006年の論文
@ja
2006年論文
@yue
2006年論文
@zh-hant
2006年論文
@zh-hk
2006年論文
@zh-mo
2006年論文
@zh-tw
2006年论文
@wuu
2006年论文
@zh
2006年论文
@zh-cn
name
Probabilistic inference of tra ...... pecific regulatory activities.
@en
type
label
Probabilistic inference of tra ...... pecific regulatory activities.
@en
prefLabel
Probabilistic inference of tra ...... pecific regulatory activities.
@en
P356
P1433
P1476
Probabilistic inference of tra ...... pecific regulatory activities.
@en
P2093
Guido Sanguinetti
P304
P356
10.1093/BIOINFORMATICS/BTL473
P407
P577
2006-09-11T00:00:00Z