A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.
about
Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiaeComputational prediction of transcription-factor binding site locationsComputational analysis of tissue-specific combinatorial gene regulation: predicting interaction between transcription factors in human tissuesGenome2D: a visualization tool for the rapid analysis of bacterial transcriptome data.A catalog of stability-associated sequence elements in 3' UTRs of yeast mRNAsFuranose-specific Sugar Transport: CHARACTERIZATION OF A BACTERIAL GALACTOFURANOSE-BINDING PROTEINEvolutionary Footprints of Short Tandem Repeats in Avian PromotersdPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq dataProsecutor: parameter-free inference of gene function for prokaryotes using DNA microarray data, genomic context and multiple gene annotation sources.Computational framework for the prediction of transcription factor binding sites by multiple data integration.Flexible promoter architecture requirements for coactivator recruitment.A comparative genomics approach to identifying the plasticity transcriptome.Evolution and selection in yeast promoters: analyzing the combined effect of diverse transcription factor binding sitesLimited functional conservation of a global regulator among related bacterial genera: Lrp in Escherichia, Proteus and VibrioGBNet: deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approachA blind deconvolution approach to high-resolution mapping of transcription factor binding sites from ChIP-seq data.Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials.The MetJ regulon in gammaproteobacteria determined by comparative genomics methods.A fast weak motif-finding algorithm based on community detection in graphs.Extending the classification of bacterial transcription factors beyond the helix-turn-helix motif as an alternative approach to discover new cis/trans relationships.Multifactorial Competition and Resistance in a Two-Species Bacterial System.Accuracy and application of the motif expression decomposition method in dissecting transcriptional regulationLarge-scale computational and statistical analyses of high transcription potentialities in 32 prokaryotic genomes.Genome-wide de novo prediction of cis-regulatory binding sites in prokaryotes.Structure-aided prediction of mammalian transcription factor complexes in conserved non-coding elements.TrFAST: a tool to predict signaling pathway-specific transcription factor binding sites.Genome-scale analyses of Escherichia coli and Salmonella enterica AraC reveal noncanonical targets and an expanded core regulon.Screening of potential pseudo att sites of Streptomyces phage ΦC31 integrase in the human genome.Use of structural DNA properties for the prediction of transcription-factor binding sites in Escherichia coliOperon formation is driven by co-regulation and not by horizontal gene transferMycoRRdb: a database of computationally identified regulatory regions within intergenic sequences in mycobacterial genomesComplex transcriptional control links NikABCDE-dependent nickel transport with hydrogenase expression in Escherichia coli.Position and distance specificity are important determinants of cis-regulatory motifs in addition to evolutionary conservation.Structure and evolution of gene regulatory networks in microbial genomes.
P2860
Q21266592-FBA497B0-F4F7-47DC-8BD0-23E3A434C202Q24568149-E9F5691E-E6B0-4854-B577-6E03816DEA38Q24674713-78D687C1-AB26-452D-A21E-89A9DF25231EQ24801645-FEB63EB2-C238-4801-9773-15990FF69661Q24812748-49446619-AFBA-42C2-BB9E-0CC8E246AC25Q27657389-BE44AA29-CC0C-4E57-8F97-619093C0DF53Q28602091-120A4995-C1FC-44E6-99C0-3947C81DFCA1Q30681790-91211943-A2ED-4300-ABCB-949683D7B995Q30849441-88C13001-B333-4776-BC63-86EB201D12A4Q31079282-FC42A3D0-8E1C-4F2E-A4F0-20752D9B9278Q33241516-B8F19AA0-C37F-4908-AE79-BF874F1F51D0Q33278160-465BD1B2-4B6D-45A3-8715-C9E8AFB77DAFQ33314598-1B469473-1AF2-4FC0-81A7-C8456FC596CAQ33327771-70E49268-830F-4CCD-87DA-8201EA3F33EBQ33371403-1AD5A417-2E3F-4D78-8270-E3AA7C26738AQ33520370-1679C68B-2FCA-4D61-95A0-E80AD7FE461BQ33680989-9FB53688-116B-4AFD-983C-C278BBF4ADF0Q34074189-520AE383-50AC-4684-9A76-0014EFF50BC6Q34833038-1D1816FF-F6F0-474F-BA5B-8ED25385AA8CQ35618547-FBCEBED6-D243-497F-9CA8-CA5304F52FB5Q35863603-7A8B3019-1DF1-4103-BF19-E0D51F7117D5Q36715572-DCEA6C24-31B6-49DF-9941-E505948F841FQ36715579-0AEAF95B-F10F-482F-8098-58B009582C32Q37215400-B2656251-586C-46ED-A631-97FAFE0E72FAQ37304886-595C4CA5-0897-4845-8A28-89A745D17BC6Q37319943-84EFF651-6B7B-4A29-98FD-B208F1DB2795Q37545645-66BB3643-E9AF-4276-9DEC-3A5E7FBD6CD3Q39018940-1E3735C0-BD39-4A3F-B920-0ECE95E355C4Q42018739-82C923B0-F3BF-421D-AF82-9B4AE2672B63Q42050891-90250286-F264-43E8-A272-BAD388C623D1Q42138747-598B4B6B-3EC7-4F5D-89F4-81F5F3825DBDQ42155244-3D57F52B-5DDF-419C-9EEE-5E9EF9A0BBC3Q42734917-9FBAB124-6D54-42F2-A0D3-54D7FA80A5E9Q49173858-0827BA2D-63B1-423D-8FEC-54DDBE9363ED
P2860
A motif co-occurrence approach for genome-wide prediction of transcription-factor-binding sites in Escherichia coli.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
@zh
2004年论文
@zh-cn
name
A motif co-occurrence approach ...... ing sites in Escherichia coli.
@en
type
label
A motif co-occurrence approach ...... ing sites in Escherichia coli.
@en
prefLabel
A motif co-occurrence approach ...... ing sites in Escherichia coli.
@en
P2093
P2860
P356
P1433
P1476
A motif co-occurrence approach ...... ing sites in Escherichia coli.
@en
P2093
Abigail M McGuire
Martha L Bulyk
Nobuhisa Masuda
P2860
P304
P356
10.1101/GR.1448004
P577
2004-02-01T00:00:00Z