Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification.
about
Analysis of overrepresented motifs in human core promoters reveals dual regulatory roles of YY1Dynamic modeling of cis-regulatory circuits and gene expression prediction via cross-gene identification.The stress response factors Yap6, Cin5, Phd1, and Skn7 direct targeting of the conserved co-repressor Tup1-Ssn6 in S. cerevisiae.Detection of functional DNA motifs via statistical over-representationGenome-wide prediction of transcriptional regulatory elements of human promoters using gene expression and promoter analysis data.A computational genomics approach to identify cis-regulatory modules from chromatin immunoprecipitation microarray data--a case study using E2F1A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data.Modelling the network of cell cycle transcription factors in the yeast Saccharomyces cerevisiae.Wide-scale analysis of human functional transcription factor binding reveals a strong bias towards the transcription start site.Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors.One hub-one process: a tool based view on regulatory network topology.Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamicsStatistical identification of gene association by CID in application of constructing ER regulatory network.Identifying significant genetic regulatory networks in the prostate cancer from microarray data based on transcription factor analysis and conditional independencyInferring Transcriptional Interactions by the Optimal Integration of ChIP-chip and Knock-out DataIdentification of polymorphic antioxidant response elements in the human genome.Mapping the human toxome by systems toxicology.Discovering regulatory binding-site modules using rule-based learning.Inflammatory gene regulatory networks in amnion cells following cytokine stimulation: translational systems approach to modeling human parturition.Sequence features that drive human promoter function and tissue specificity.Comparative pathogenesis and systems biology for biodefense virus vaccine development.OncoCis: annotation of cis-regulatory mutations in cancer.Non-coding RNA regulation in pathogenic bacteria located inside eukaryotic cells.Transcription factor binding and modified histones in human bidirectional promoters.CRSD: a comprehensive web server for composite regulatory signature discoveryBoCaTFBS: a boosted cascade learner to refine the binding sites suggested by ChIP-chip experimentsFrom System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach.PAP: a comprehensive workbench for mammalian transcriptional regulatory sequence analysis.Computational identification of transcriptional regulatory elements in DNA sequence.Machine learning for regulatory analysis and transcription factor target prediction in yeastMicroRNAs as modulators of smoking-induced gene expression changes in human airway epithelium.Discovery and verification of functional single nucleotide polymorphisms in regulatory genomic regions: current and developing technologiesComputational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia.Identification of an OCT4 and SRY regulatory module using integrated computational and experimental genomics approaches.A chromatin-mediated mechanism for specification of conditional transcription factor targets.Computational identification of transcription factors involved in early cellular response to a stimulus.Genetic and pharmacological inactivation of adenosine A2A receptor reveals an Egr-2-mediated transcriptional regulatory network in the mouse striatum.CARRIE web service: automated transcriptional regulatory network inference and interactive analysisGene expression profiling of potential PPARgamma target genes in mouse aorta.Transcription factor network reconstruction using the living cell array
P2860
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P2860
Computational inference of transcriptional regulatory networks from expression profiling and transcription factor binding site identification.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年論文
@yue
2004年論文
@zh-hant
2004年論文
@zh-hk
2004年論文
@zh-mo
2004年論文
@zh-tw
2004年论文
@wuu
2004年论文
@zh
2004年论文
@zh-cn
name
Computational inference of tra ...... r binding site identification.
@en
type
label
Computational inference of tra ...... r binding site identification.
@en
prefLabel
Computational inference of tra ...... r binding site identification.
@en
P2093
P2860
P356
P1476
Computational inference of tra ...... r binding site identification.
@en
P2093
Peter M Haverty
Ulla Hansen
Zhiping Weng
P2860
P304
P356
10.1093/NAR/GKH183
P407
P577
2004-01-02T00:00:00Z