Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis.
about
dcGOR: an R package for analysing ontologies and protein domain annotationsScientific research in the age of omics: the good, the bad, and the sloppyA survey of metabolic databases emphasizing the MetaCyc familyAll dosage compensation is local: gene-by-gene regulation of sex-biased expression on the chicken Z chromosomeGenetic identification of a network of factors that functionally interact with the nucleosome remodeling ATPase ISWIRhythmic diel pattern of gene expression in juvenile maize leaf.Transcriptome analyses of inhibitor-treated schistosome females provide evidence for cooperating Src-kinase and TGFβ receptor pathways controlling mitosis and eggshell formationImatinib treatment causes substantial transcriptional changes in adult Schistosoma mansoni in vitro exhibiting pleiotropic effectsOptimization criteria and biological process enrichment in homologous multiprotein modulesStrong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoiresQuantitative analysis of ChIP-seq data uncovers dynamic and sustained H3K4me3 and H3K27me3 modulation in cancer cells under hypoxiaOverrepresentation of glutamate signaling in Alzheimer's disease: network-based pathway enrichment using meta-analysis of genome-wide association studies.REVIGO summarizes and visualizes long lists of gene ontology termsComparative genomics in Chlamydomonas and Plasmodium identifies an ancient nuclear envelope protein family essential for sexual reproduction in protists, fungi, plants, and vertebrates.Modulating protein-protein interactions with small molecules: the importance of binding hotspots.Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteomeThe PinkThing for analysing ChIP profiling data in their genomic contextData mining in the MetaCyc family of pathway databasesRNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish.A modular framework for gene set analysis integrating multilevel omics data.GENE-counter: a computational pipeline for the analysis of RNA-Seq data for gene expression differences.On the importance of polar interactions for complexes containing intrinsically disordered proteins.XGR software for enhanced interpretation of genomic summary data, illustrated by application to immunological traits.ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput dataOntologizer 2.0--a multifunctional tool for GO term enrichment analysis and data exploration.Patterns of evolutionary constraints on genes in humans.Proteomic profiling of Plasmodium sporozoite maturation identifies new proteins essential for parasite development and infectivityGO Explorer: A gene-ontology tool to aid in the interpretation of shotgun proteomics data.GOGrapher: A Python library for GO graph representation and analysis.Improving detection of differentially expressed gene sets by applying cluster enrichment analysis to Gene Ontology.Generation of Gene Ontology benchmark datasets with various types of positive signal.Functional characterization of transcription factor motifs using cross-species comparison across large evolutionary distances.Protein interaction networks--more than mere modulesGOing Bayesian: model-based gene set analysis of genome-scale data.Functional bias in molecular evolution rate of Arabidopsis thalianaGenome-wide identification of new Wnt/beta-catenin target genes in the human genome using CART method.Genome-wide transcriptomic analysis of response to low temperature reveals candidate genes determining divergent cold-sensitivity of maize inbred lines.Multi-level reproducibility of signature hubs in human interactome for breast cancer metastasis.Enrichment map: a network-based method for gene-set enrichment visualization and interpretation.SIDEKICK: Genomic data driven analysis and decision-making framework.
P2860
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P2860
Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis.
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
2007年论文
@zh
2007年论文
@zh-cn
name
Improved detection of overrepr ...... ns with parent child analysis.
@en
type
label
Improved detection of overrepr ...... ns with parent child analysis.
@en
prefLabel
Improved detection of overrepr ...... ns with parent child analysis.
@en
P356
P1433
P1476
Improved detection of overrepr ...... ns with parent child analysis.
@en
P2093
Sebastian Bauer
Steffen Grossmann
P304
P356
10.1093/BIOINFORMATICS/BTM440
P407
P577
2007-09-11T00:00:00Z