Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes
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PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogenyPhyloScan: identification of transcription factor binding sites using cross-species evidenceSequencing and comparison of yeast species to identify genes and regulatory elementsA phylogenetic Gibbs sampler that yields centroid solutions for cis-regulatory site predictionA survey of DNA motif finding algorithmsA novel method for accurate operon predictions in all sequenced prokaryotesTRACTOR_DB: a database of regulatory networks in gamma-proteobacterial genomesPrediction of co-regulated genes in Bacillus subtilis on the basis of upstream elements conserved across three closely related speciesIdentification of conserved regulatory elements by comparative genome analysisFrom sequence to structure and back again: approaches for predicting protein-DNA bindingBioinformatic identification of novel regulatory DNA sequence motifs in Streptomyces coelicolorPosition specific variation in the rate of evolution in transcription factor binding sitesIn silico identification and experimental validation of PmrAB targets in Salmonella typhimurium by regulatory motif detectionReconstruction of regulatory and metabolic pathways in metal-reducing delta-proteobacteriaIdentification of regulatory targets of tissue-specific transcription factors: application to retina-specific gene regulation.Bacterial lipids: metabolism and membrane homeostasisProkaryotic genome regulation: a revolutionary paradigmRegPrecise 3.0 – A resource for genome-scale exploration of transcriptional regulation in bacteriaDiscovery of regulatory elements by a computational method for phylogenetic footprintingCharacterization of molecular mechanisms controlling fabAB transcription in Pseudomonas aeruginosaCharacterization of Mycobacterium tuberculosis Rv3676 (CRPMt), a cyclic AMP receptor protein-like DNA binding protein.Plus ça change - evolutionary sequence divergence predicts protein subcellular localization signalsFatty acid synthesis in Escherichia coli and its applications towards the production of fatty acid based biofuelsDefining the plasticity of transcription factor binding sites by Deconstructing DNA consensus sequences: the PhoP-binding sites among gamma/enterobacteria.Dissecting the PhoP regulatory network of Escherichia coli and Salmonella enterica.Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sitesBayesian hierarchical model of protein-binding microarray k-mer data reduces noise and identifies transcription factor subclasses and preferred k-mersMore robust detection of motifs in coexpressed genes by using phylogenetic information.PHOG: a database of supergenomes built from proteome complements.Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs.Large-scale turnover of functional transcription factor binding sites in Drosophila.WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequencesSalmonella typhimurium PtsJ is a novel MocR-like transcriptional repressor involved in regulating the vitamin B6 salvage pathway.Wide-scale analysis of human functional transcription factor binding reveals a strong bias towards the transcription start site.Orthologous transcription factors in bacteria have different functions and regulate different genes.Finding regulatory elements and regulatory motifs: a general probabilistic framework.Comparative transcriptomics in Yersinia pestis: a global view of environmental modulation of gene expression.Evaluation of phylogenetic footprint discovery for predicting bacterial cis-regulatory elements and revealing their evolutionOnto-CC: a web server for identifying Gene Ontology conceptual clusters.Identifying promoter features of co-regulated genes with similar network motifs.
P2860
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P2860
Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes
description
2001 nî lūn-bûn
@nan
2001年の論文
@ja
2001年論文
@yue
2001年論文
@zh-hant
2001年論文
@zh-hk
2001年論文
@zh-mo
2001年論文
@zh-tw
2001年论文
@wuu
2001年论文
@zh
2001年论文
@zh-cn
name
Phylogenetic footprinting of t ...... tes in proteobacterial genomes
@en
type
label
Phylogenetic footprinting of t ...... tes in proteobacterial genomes
@en
prefLabel
Phylogenetic footprinting of t ...... tes in proteobacterial genomes
@en
P2093
P2860
P356
P1476
Phylogenetic footprinting of t ...... tes in proteobacterial genomes
@en
P2093
C E Lawrence
V Derbyshire
W Thompson
P2860
P304
P356
10.1093/NAR/29.3.774
P407
P577
2001-02-01T00:00:00Z