Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons. - Wikidata - wikimedia - TriplyDB

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.

http://www.wikidata.org/entity/Q39357680

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Prioritizing targets for structural biology through the lens of proteomics: the archaeal protein TGAM_1934 from Thermococcus gammatolerans Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395 Genome and proteome analysis of Pseudomonas chloritidismutans AW-1T that grows on n-decane with chlorate or oxygen as electron acceptor.RNA sequencing and proteogenomics reveal the importance of leaderless mRNAs in the radiation-tolerant bacterium Deinococcus deserti.N-Terminal-oriented proteogenomics of the marine bacterium roseobacter denitrificans Och114 using N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl)phosphonium bromide (TMPP) labeling and diagonal chromatography.A proteogenomic update to Yersinia: enhancing genome annotation.N-terminal Proteomics Assisted Profiling of the Unexplored Translation Initiation Landscape in Arabidopsis thaliana Proteogenomic analysis of bacteria and archaea: a 46 organism case study Comparative proteogenomics of twelve Roseobacter exoproteomes reveals different adaptive strategies among these marine bacteria.High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.Proteogenomics to discover the full coding content of genomes: a computational perspective.In-depth analysis of exoproteomes from marine bacteria by shotgun liquid chromatography-tandem mass spectrometry: the Ruegeria pomeroyi DSS-3 case-study.Comparative omics-driven genome annotation refinement: application across Yersiniae Microbiology and proteomics, getting the best of both worlds!Shotgun nanoLC-MS/MS proteogenomics to document MALDI-TOF biomarkers for screening new members of the Ruegeria genus.Revisiting iodination sites in thyroglobulin with an organ-oriented shotgun strategy.Crystal structure of the DNA polymerase III β subunit (β-clamp) from the extremophile Deinococcus radiodurans.Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.Comparative genomics of Cluster O mycobacteriophages.Improving the quality of genome, protein sequence, and taxonomy databases: a prerequisite for microbiome meta-omics 2.0.Toward a standard in structural genome annotation for prokaryotes.Moving from unsequenced to sequenced genome: reanalysis of the proteome of Leishmania donovani.Site-specific O-glycosylation on the MUC2 mucin protein inhibits cleavage by the Porphyromonas gingivalis secreted cysteine protease (RgpB).Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-algorithmic pipeline.Tissue-specific Proteogenomic Analysis of Plutella xylostella Larval Midgut Using a Multialgorithm Pipeline.The current state of microbial proteomics: where we are and where we want to go.Kinetic control of translation initiation in bacteria.Exoproteomics: exploring the world around biological systems.Proteogenomics for environmental microbiology.N-terminomics and proteogenomics, getting off to a good start.Proteogenomics in microbiology: taking the right turn at the junction of genomics and proteomics.The application of terminomics for the identification of protein start sites and proteoforms in bacteria.Identification of new protein-coding genes with a potential role in the virulence of the plant pathogen Xanthomonas euvesicatoria.Clinical implications of recent advances in proteogenomics.Proteogenomics of rare taxonomic phyla: A prospective treasure trove of protein coding genes.Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria.Surface and Exoproteomes of Gram-Positive Pathogens for Vaccine Discovery.Identification of Small Novel Coding Sequences, a Proteogenomics Endeavor.Major soluble proteome changes in Deinococcus deserti over the earliest stages following gamma-ray irradiation Evaluation of the accuracy of protein quantification using isotope TMPP-labeled peptides.

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P2860

Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.

http://www.wikidata.org/entity/Q39357680

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Proteomics-based refinement of ...... translation initiation codons.

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Molecular & Cellular Proteomics

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Proteomics-based refinement of ...... translation initiation codons.

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Alain Dedieu

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Bernard Fernandez

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Christine Enjalbal

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Gilles Subra

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Jean-Charles Gaillard

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Mathieu Baudet

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Mohamed Barakat

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P2860

Alliance of proteomics and genomics to unravel the specificities of Sahara bacterium Deinococcus deserti

Deinococcus geothermalis: the pool of extreme radiation resistance genes shrinks

Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides

Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea

Genome Sequence of the Radioresistant Bacterium Deinococcus radiodurans R1

The genome sequence of the extreme thermophile Thermus thermophilus

Global analysis of the Deinococcus radiodurans proteome by using accurate mass tags

Annotating genomes with massive-scale RNA sequencing

Comparative proteogenomics: combining mass spectrometry and comparative genomics to analyze multiple genomes

Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels

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19875382

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