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TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.

TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.

http://www.wikidata.org/entity/Q39718549

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Characterization of a 190-kilobase pair domain of human type I hair keratin genes Differential transcriptional regulation of the monocyte-chemoattractant protein-1 (MCP-1) gene in tumorigenic and non-tumorigenic HPV 18 positive cells: the role of the chromatin structure and AP-1 composition DIK, a novel protein kinase that interacts with protein kinase Cdelta. Cloning, characterization, and gene analysis Construction of predictive promoter models on the example of antibacterial response of human epithelial cells Identification and characterization of MAE1, the Saccharomyces cerevisiae structural gene encoding mitochondrial malic enzyme Future vision of the GDB human genome database Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation Molecular characterization and expression of the gene for mouse NAD+:arginine ecto-mono(ADP-ribosyl)transferase, Art1 Purification of the aldehyde oxidase homolog 1 (AOH1) protein and cloning of the AOH1 and aldehyde oxidase homolog 2 (AOH2) genes. Identification of a novel molybdo-flavoprotein gene cluster on mouse chromosome 1 TRANSFAC: transcriptional regulation, from patterns to profiles Headbobber: a combined morphogenetic and cochleosaccular mouse model to study 10qter deletions in human deafness.A reliable and simple method for two-dimensional electrophoresis and identification of HeLa nuclear alkaline nucleic acid-binding proteins using immobilized pH gradient.Simultaneous analysis of distinct Omics data sets with integration of biological knowledge: Multiple Factor Analysis approach Human adeno-associated virus type 5 is only distantly related to other known primate helper-dependent parvoviruses.Novel regulatory factors interacting with the promoter of the gene encoding the mRNA cap binding protein (eIF4E) and their function in growth regulation.Meta-analysis of heterogeneous Down Syndrome data reveals consistent genome-wide dosage effects related to neurological processes Definition of a T-cell receptor beta gene core enhancer of V(D)J recombination by transgenic mapping.Sequence requirements for plasmid nuclear import.The TRANSFAC system on gene expression regulation.The Eukaryotic Promoter Database EPD.Oxytocin and vasopressin receptor gene variation as a proximate base for inter- and intraspecific behavioral differences in bonobos and chimpanzees.FlyNets and GIF-DB, two internet databases for molecular interactions in Drosophila melanogaster.EpoDB: a database of genes expressed during vertebrate erythropoiesis.PLACE: a database of plant cis-acting regulatory DNA elements Databases on transcriptional regulation: TRANSFAC, TRRD and COMPEL Molecular interplay between leptin, insulin-like growth factor-1, and β-amyloid in organotypic slices from rabbit hippocampus.C/EBP transcription factors in the lung epithelium.Characterisation of the mouse vasoactive intestinal peptide receptor type 2 gene, Vipr2, and identification of a polymorphic LINE-1-like sequence that confers altered promoter activity.JIGSAW, GeneZilla, and GlimmerHMM: puzzling out the features of human genes in the ENCODE regions Isolation and characterization of the human aldehyde oxidase gene: conservation of intron/exon boundaries with the xanthine oxidoreductase gene indicates a common origin.ALU repeats in promoters are position-dependent co-response elements (coRE) that enhance or repress transcription by dimeric and monomeric progesterone receptors.NF-kappaB-YY1-miR-29 regulatory circuitry in skeletal myogenesis and rhabdomyosarcoma.Runx2 activates PI3K/Akt signaling via mTORC2 regulation in invasive breast cancer cells.Computational identification of transcription factors involved in early cellular response to a stimulus.Analysis of the DNA-binding site for Xenopus glucocorticoid receptor accessory factor. Critical nucleotides for binding specificity in vitro and for amplification of steroid-induced fibrinogen gene transcription.Endoplasmic reticulum stress-induced CHOP activation mediates the down-regulation of leptin in human neuroblastoma SH-SY5Y cells treated with the oxysterol 27-hydroxycholesterol.TRANSCompel: a database on composite regulatory elements in eukaryotic genes.COMPEL: a database on composite regulatory elements providing combinatorial transcriptional regulation Binding of two nuclear complexes to a novel regulatory element within the human S100A9 promoter drives the S100A9 gene expression.Conserved gene structure and transcription factor sites in the human and mouse deoxycytidine kinase genes.

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P2860

TRANSFAC, TRRD and COMPEL: towards a federated database system on transcriptional regulation.

http://www.wikidata.org/entity/Q39718549

description

1997 nî lūn-bûn

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1997年の論文

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1997年論文

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1997年論文

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1997年論文

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1997年論文

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1997年論文

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1997年论文

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1997年论文

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1997年论文

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name

TRANSFAC, TRRD and COMPEL: tow ...... on transcriptional regulation.

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TRANSFAC, TRRD and COMPEL: tow ...... on transcriptional regulation.

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type

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TRANSFAC, TRRD and COMPEL: tow ...... on transcriptional regulation.

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TRANSFAC, TRRD and COMPEL: tow ...... on transcriptional regulation.

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TRANSFAC, TRRD and COMPEL: tow ...... on transcriptional regulation.

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TRANSFAC, TRRD and COMPEL: tow ...... on transcriptional regulation.

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TRANSFAC, TRRD and COMPEL: tow ...... on transcriptional regulation

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A E Kel

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A G Romaschenko

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H Karas

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O V Kel

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P Dietze

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R Knüppel

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T Heinemeyer

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P2860

TRANSFAC: a database on transcription factors and their DNA binding sites

Compilation of transcription regulating proteins

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

Compilation and analysis of eukaryotic POL II promoter sequences

A compilation of composite regulatory elements affecting gene transcription in vertebrates

The high mobility group protein HMG I(Y) is required for NF-kappa B-dependent virus induction of the human IFN-beta gene.

HMGI(Y) and Sp1 in addition to NF-kappa B regulate transcription of the MGSA/GRO alpha gene.

Scaffold/matrix-attached regions: structural properties creating transcriptionally active loci.

A regulatory element that mediates co-operation between a PEA3-AP-1 element and an AP-1 site is required for phorbol ester induction of urokinase enhancer activity in HepG2 hepatoma cells.

Cooperativity between two NF-kappa B complexes, mediated by high-mobility-group protein I(Y), is essential for cytokine-induced expression of the E-selectin promoter.

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265-268

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10.1093/NAR/25.1.265

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1

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25

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Edgar Wingender

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14191702

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9016550

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146363

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