about
Expansion of the BioCyc collection of pathway/genome databases to 160 genomes.Beyond 100 genomesCommunity structure detection for overlapping modules through mathematical programming in protein interaction networksUsing ILP to Identify Pathway Activation Patterns in Systems BiologyVirus-like particle analysis in yeast homogenate using a laser light-scattering assay.Network-based data integration for selecting candidate virulence associated proteins in the cereal infecting fungus Fusarium graminearumPathway-level disease data mining through hyper-box principles.CoGenT++: an extensive and extensible data environment for computational genomics.Functional and topological properties in hepatocellular carcinoma transcriptome.Stratification of co-evolving genomic groups using ranked phylogenetic profiles.Promoter complexity and tissue-specific expression of stress response components in Mytilus galloprovincialis, a sessile marine invertebrate species.Genome-wide expression patterns in physiological cardiac hypertrophy.A systems model for immune cell interactions unravels the mechanism of inflammation in human skin.DyCoNet: a Gephi plugin for community detection in dynamic complex networks.Protein coalitions in a core mammalian biochemical network linked by rapidly evolving proteins.Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks.Evaluation of annotation strategies using an entire genome sequence.Pathway activity inference for multiclass disease classification through a mathematical programming optimisation framework.Genome evolution reveals biochemical networks and functional modules.Metabolic database systems for the analysis of genome-wide function.CytoASP: a Cytoscape app for qualitative consistency reasoning, prediction and repair in biological networks.Mapping cis- and trans-regulatory effects across multiple tissues in twins.Toward prediction of immune mechanisms and design of immunotherapies in melanoma.Anti-Folate Receptor-α IgE but not IgG Recruits Macrophages to Attack Tumors via TNFα/MCP-1 Signaling.Integrative biology approach identifies cytokine targeting strategies for psoriasis.Functional versatility and molecular diversity of the metabolic map of Escherichia coli.Detection of composite communities in multiplex biological networksThe phylogenetic extent of metabolic enzymes and pathways.Computational analysis of Plasmodium falciparum metabolism: organizing genomic information to facilitate drug discovery.Module detection in complex networks using integer optimisationMetabolic homeostasis is maintained in myocardial hibernation by adaptive changes in the transcriptome and proteome.Automated metabolic reconstruction for Methanococcus jannaschii.Gene network and proteomic analyses of cardiac responses to pathological and physiological stress.The pruritus- and TH2-associated cytokine IL-31 promotes growth of sensory nerves.Chondroitin Sulfate Proteoglycan 4 and Its Potential As an Antibody Immunotherapy Target across Different Tumor Types.CAST: an iterative algorithm for the complexity analysis of sequence tracts. Complexity analysis of sequence tracts.MINLP models for the synthesis of optimal peptide tags and downstream protein processing.Robustness of the p53 network and biological hackers.An immunologically relevant rodent model demonstrates safety of therapy using a tumour-specific IgE.Reactome Pengine: a web-logic API to the Homo sapiens reactome
P50
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P50
description
hulumtuese
@sq
onderzoeker
@nl
researcher
@en
հետազոտող
@hy
name
Sophia Tsoka
@ast
Sophia Tsoka
@en
Sophia Tsoka
@es
Sophia Tsoka
@sl
type
label
Sophia Tsoka
@ast
Sophia Tsoka
@en
Sophia Tsoka
@es
Sophia Tsoka
@sl
prefLabel
Sophia Tsoka
@ast
Sophia Tsoka
@en
Sophia Tsoka
@es
Sophia Tsoka
@sl
P106
P1153
6603414724
P21
P2456
P31
P496
0000-0001-8403-1282