Characterization and Prediction of Protein Interfaces to Infer Protein-Protein Interaction NetworksTowards inferring time dimensionality in protein-protein interaction networks by integrating structures: the p53 example.Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM.SteinerNet: a web server for integrating 'omic' data to discover hidden components of response pathways.Genome-Scale Networks Link Neurodegenerative Disease Genes to α-Synuclein through Specific Molecular Pathways.Network-Based Interpretation of Diverse High-Throughput Datasets through the Omics Integrator Software PackageSimultaneous reconstruction of multiple signaling pathways via the prize-collecting steiner forest problemArchitectures and functional coverage of protein-protein interfaces.Network Modeling Identifies Patient-specific Pathways in Glioblastoma.The potential impact of recent developments in three-dimensional quantitative interaction proteomics on structural biology.A survey of available tools and web servers for analysis of protein-protein interactions and interfaces.Prediction of protein-protein interactions: unifying evolution and structure at protein interfaces.HotPoint: hot spot prediction server for protein interfaces.Predicting Protein-Protein Interactions from the Molecular to the Proteome Level.Prediction of Protein Interactions by Structural Matching: Prediction of PPI Networks and the Effects of Mutations on PPIs that Combines Sequence and Structural Information.Reconstruction of the temporal signaling network in Salmonella-infected human cellsFunctional Constraints on Replacing an Essential Gene with Its Ancient and Modern HomologsHotSprint: database of computational hot spots in protein interfaces.Analysis and network representation of hotspots in protein interfaces using minimum cut trees.Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy.Fast and accurate modeling of protein-protein interactions by combining template-interface-based docking with flexible refinement.Comparative phosphoproteomic analysis reveals signaling networks regulating monopolar and bipolar cytokinesis.The PI3K/AKT/mTOR interactive pathway.A Structural Perspective on the Modulation of Protein-Protein Interactions with Small MoleculesPhylogenetic and Other Conservation-Based Approaches to Predict Protein Functional Sites3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients3D spatial organization and network-guided comparison of mutation profiles in Glioblastoma reveals similarities across patients
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Associate professor for computational biology and bioinformatics
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0000-0002-0389-9459