ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular ContextAdiabatic coarse-graining and simulations of stochastic biochemical networks.Specificity and completion time distributions of biochemical processesInformation transduction capacity of noisy biochemical signaling networksModel cortical association fields account for the time course and dependence on target complexity of human contour perceptionReconstruction of metabolic networks from high-throughput metabolite profiling data: in silico analysis of red blood cell metabolism.Neural coding of natural stimuli: information at sub-millisecond resolution.Mass conservation and inference of metabolic networks from high-throughput mass spectrometry dataGenotype to phenotype mapping and the fitness landscape of the E. coli lac promoter.Gain control in molecular information processing: lessons from neuroscienceGenome-wide identification of post-translational modulators of transcription factor activity in human B cells.Reverse engineering cellular networks.Growth of bacteria in 3-d coloniesFitness in time-dependent environments includes a geometric phase contribution.Speeding up Evolutionary Search by Small Fitness Fluctuations.Selected papers from the Fourth Annual q-bio Conference on Cellular Information Processing.Q-bio 2007: a watershed moment in modern biology.A large number of receptors may reduce cellular response time variation.Fluctuation-dissipation theorem and models of learning.Occam factors and model independent Bayesian learning of continuous distributions.The Berry phase and the pump flux in stochastic chemical kineticsMillisecond Spike Timing Codes for Motor ControlAutomated, predictive, and interpretable inference of C. elegans escape dynamicsChance, long tails, and inference in a non-Gaussian, Bayesian theory of vocal learning in songbirdsReverse-Engineering Biological Networks From Large Data SetsErratum: “Specificity and completion time distributions of biochemical processes” [J. Chem. Phys. 131, 235103 (2009)]Editorial: Selected papers from the Third q-bio Conference on Cellular Information ProcessingTop-down models explain key aspects of a Speed-of-Sight character recognition taskErgodic and non-ergodic anomalous diffusion in coupled stochastic processesNovel computing paradigms: Quo vadis?Neural coding of natural stimuli: information at sub-millisecond resolutionGenome-Wide Discovery of Modulators of Transcriptional Interactions in Human B LymphocytesNeural Coding of Natural Stimuli: Information at Sub-Millisecond ResolutionOn the interaction of point charges in an arbitrary domainPotential and field singularity at a surface point chargeComplexity through nonextensivityMinimal subtraction and the Callan-Symanzik equationAutomated, predictive, and interpretable inference of escape dynamicsRandomly connected networks generate emergent selectivity and predict decoding properties of large populations of neurons
P50
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