about
RuleMonkey: software for stochastic simulation of rule-based modelsModeling for (physical) biologists: an introduction to the rule-based approachEnhanced dimerization drives ligand-independent activity of mutant epidermal growth factor receptor in lung cancerThe Brucella TIR-like protein TcpB interacts with the death domain of MyD88Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sitesPhosphorylation site dynamics of early T-cell receptor signalingImproved predictions of transcription factor binding sites using physicochemical features of DNA.Prediction of oxidoreductase-catalyzed reactions based on atomic properties of metabolites.Recruitment of the adaptor protein Grb2 to EGFR tetramers.Modeling multivalent ligand-receptor interactions with steric constraints on configurations of cell-surface receptor aggregates.Hierarchical graphs for rule-based modeling of biochemical systemsOptimal aggregation of FcεRI with a structurally defined trivalent ligand overrides negative regulation driven by phosphatases.The efficiency of reactant site sampling in network-free simulation of rule-based models for biochemical systems.The complexity of complexes in signal transduction.Specification, annotation, visualization and simulation of a large rule-based model for ERBB receptor signaling.Binding of nucleoid-associated protein fis to DNA is regulated by DNA breathing dynamics.Modeling the early signaling events mediated by FcepsilonRI.Kinetic Monte Carlo method for rule-based modeling of biochemical networks.Rule-based modeling of biochemical systems with BioNetGen.Modeling the effect of APC truncation on destruction complex function in colorectal cancer cellsPrediction of metabolic reactions based on atomic and molecular properties of small-molecule compounds.On imposing detailed balance in complex reaction mechanisms.Scaffold-mediated nucleation of protein signaling complexes: elementary principles.Mitochondrial morphological features are associated with fission and fusion eventsComputational analysis of an autophagy/translation switch based on mutual inhibition of MTORC1 and ULK1Use of mechanistic models to integrate and analyze multiple proteomic datasetsSingle-cell measurements of IgE-mediated FcεRI signaling using an integrated microfluidic platformBioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments.GetBonNie for building, analyzing and sharing rule-based models.The Seventh q-bio Conference: meeting report and preface.Kinetic proofreading model.Rule-based modeling: a computational approach for studying biomolecular site dynamics in cell signaling systems.Modeling biomolecular site dynamics in immunoreceptor signaling systems.Carbon-fate maps for metabolic reactions.Q-bio 2007: a watershed moment in modern biology.How to deal with large models?The complexity of cell signaling and the need for a new mechanics.Determinants of bistability in induction of the Escherichia coli lac operon.Special section dedicated to The Sixth q-bio Conference: meeting report and preface.A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity.
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description
hulumtues
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researcher
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հետազոտող
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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Bill Hlavacek
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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William S Hlavacek
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0000-0003-4383-8711