Structure and thermodynamics of RNA-protein binding: using molecular dynamics and free energy analyses to calculate the free energies of binding and conformational change.
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Kinetic analysis of the role of the tyrosine 13, phenylalanine 56 and glutamine 54 network in the U1A/U1 hairpin II interactionCrystal structure of HAb18G/CD147: implications for immunoglobulin superfamily homophilic adhesionTwo functionally distinct steps mediate high affinity binding of U1A protein to U1 hairpin II RNAMolecular dynamics simulation of the human U2B" protein complex with U2 snRNA hairpin IV in aqueous solutionCarbohydrate-protein recognition: molecular dynamics simulations and free energy analysis of oligosaccharide binding to concanavalin A.Exploring the Inhibitory Mechanism of Approved Selective Norepinephrine Reuptake Inhibitors and Reboxetine Enantiomers by Molecular Dynamics StudyMolecular dynamics studies of the HIV-1 TAR and its complex with argininamide.Construction of a small peptide library related to inhibitor OM99-2 and its structure-activity relationship to beta-secretase.A thermodynamic framework for Mg2+ binding to RNA.Accurate prediction of the binding free energy and analysis of the mechanism of the interaction of replication protein A (RPA) with ssDNA.Theoretical prediction of the binding free energy for mutants of replication protein A.Computational alanine scanning of the 1:1 human growth hormone-receptor complex.Molecular dynamics and binding specificity analysis of the bovine immunodeficiency virus BIV Tat-TAR complexCalculations of free-energy contributions to protein-RNA complex stabilization.Simulating structural and thermodynamic properties of carcinogen-damaged DNA.Induced fit and the entropy of structural adaptation in the complexation of CAP and lambda-repressor with cognate DNA sequences.Correlated motions in the U1 snRNA stem/loop 2:U1A RBD1 complex.Stereochemistry and position-dependent effects of carcinogens on TATA/TBP binding.Contributions of stacking, preorganization, and hydrogen bonding to the thermodynamic stability of duplexes between RNA and 2'-O-methyl RNA with locked nucleic acids.A molecular dynamics study and free energy analysis of complexes between the Mlc1p protein and two IQ motif peptidesDynamics of Recognition between tRNA and elongation factor TuExit strategies for charged tRNA from GluRSAffinity and specificity of protein U1A-RNA complex formation based on an additive component free energy modelQuinoline based furanones and their nitrogen analogues: Docking, synthesis and biological evaluationInsights into the Structural Dynamics of Nucleocytoplasmic Transport of tRNA by Exportin-t.Thermodynamic basis for promiscuity and selectivity in protein-protein interactions: PDZ domains, a case study.4-hydroxyequilenin-adenine lesions in DNA duplexes: stereochemistry, damage site, and structure.U1A protein-stem loop 2 RNA recognition: prediction of structural differences from protein mutationsInfluence of Grid Spacing in Poisson-Boltzmann Equation Binding Energy EstimationSynergy between NMR measurements and MD simulations of protein/RNA complexes: application to the RRMs, the most common RNA recognition motifs.Insights into the thermal stabilization and conformational transitions of DNA by hyperthermophile protein Sso7d: molecular dynamics simulations and MM-PBSA analysis.Entropic fragment-based approach to aptamer design.Substitution of an essential adenine in the U1A-RNA complex with a non-polar isostere.Molecular dynamics and free energy analysis of neuraminidase-ligand interactions.The snRNP 15.5K protein folds its cognate K-turn RNA: a combined theoretical and biochemical study.Contributions to the binding free energy of ligands to avidin and streptavidin.RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview.The fused SnoaL_2 domain in the Mycobacterium tuberculosis sigma factor σJ modulates promoter recognition.Accurate, robust, and reliable calculations of Poisson-Boltzmann binding energies.Identification of the inhibitory mechanism of FDA approved selective serotonin reuptake inhibitors: an insight from molecular dynamics simulation study.
P2860
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P2860
Structure and thermodynamics of RNA-protein binding: using molecular dynamics and free energy analyses to calculate the free energies of binding and conformational change.
description
2000 nî lūn-bûn
@nan
2000年の論文
@ja
2000年論文
@yue
2000年論文
@zh-hant
2000年論文
@zh-hk
2000年論文
@zh-mo
2000年論文
@zh-tw
2000年论文
@wuu
2000年论文
@zh
2000年论文
@zh-cn
name
Structure and thermodynamics o ...... ing and conformational change.
@en
type
label
Structure and thermodynamics o ...... ing and conformational change.
@en
prefLabel
Structure and thermodynamics o ...... ing and conformational change.
@en
P356
P1476
Structure and thermodynamics o ...... ing and conformational change.
@en
P2093
P304
P356
10.1006/JMBI.2000.3629
P407
P577
2000-04-01T00:00:00Z