about
Amyloid beta-protein monomer folding: free-energy surfaces reveal alloform-specific differencesThe protein folding problemComputational model for protein unfolding simulation.Implicit modeling of nonpolar solvation for simulating protein folding and conformational transitions.A test on peptide stability of AMBER force fields with implicit solvationBlind test of physics-based prediction of protein structures.FF12MC: A revised AMBER forcefield and new protein simulation protocol.Trends in template/fragment-free protein structure predictionPolarizable intermolecular potentials for water and benzene interacting with halide and metal ions.Elucidation of the Aggregation Pathways of Helix-Turn-Helix Peptides: Stabilization at the Turn Region Is Critical for Fibril Formation.Structural characterization of MG and pre-MG states of proteins by MD simulations, NMR, and other techniques.Characterizing a partially ordered miniprotein through folding molecular dynamics simulations: Comparison with the experimental data.Combining experiment and simulation in protein folding: closing the gap for small model systems.Chemical, physical, and theoretical kinetics of an ultrafast folding protein.Quantitative determination of site-specific conformational distributions in an unfolded protein by solid-state nuclear magnetic resonance.Detection of a transient intermediate in a rapid protein folding process by solid-state nuclear magnetic resonanceFolding simulations of a de novo designed protein with a betaalphabeta fold.The folding transition-state ensemble of a four-helix bundle protein: helix propensity as a determinant and macromolecular crowding as a probe.Folding network of villin headpiece subdomain.Using an amino acid fluorescence resonance energy transfer pair to probe protein unfolding: application to the villin headpiece subdomain and the LysM domain.Challenges in protein folding simulations: Timescale, representation, and analysisHeterogeneity even at the speed limit of folding: large-scale molecular dynamics study of a fast-folding variant of the villin headpieceThe protein folding network indicates that the ultrafast folding mutant of villin headpiece subdomain has a deeper folding funnelComputational evidence that fast translation speed can increase the probability of cotranslational protein folding.Ten-microsecond molecular dynamics simulation of a fast-folding WW domain.Vulnerability in Popular Molecular Dynamics Packages Concerning Langevin and Andersen DynamicsUltrafast folding kinetics and cooperativity of villin headpiece in single-molecule force spectroscopy.Probing the folding transition state structure of the villin headpiece subdomain via side chain and backbone mutagenesis.Common structural transitions in explicit-solvent simulations of villin headpiece foldingA compact native 24-residue supersecondary structure derived from the villin headpiece subdomain.Equilibrium kinetic network of the villin headpiece in implicit solvent.Folding processes of the B domain of protein A to the native state observed in all-atom ab initio folding simulations.The fast-folding HP35 double mutant has a substantially reduced primary folding free energy barrier.Dual folding pathways of an alpha/beta protein from all-atom ab initio folding simulationsNative like structure in the unfolded state of the villin headpiece helical subdomain, an ultrafast folding proteinDiscrete Frenet frame, inflection point solitons, and curve visualization with applications to folded proteins.Separability between overall and internal motion: a protein folding problem.Binding free-energy calculation of an ion-peptide complex by constrained dynamics.Efficiently finding the minimum free energy path from steepest descent path.Discrete nonlinear Schrödinger equation and polygonal solitons with applications to collapsed proteins.
P2860
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P2860
description
2007 nî lūn-bûn
@nan
2007年の論文
@ja
2007年論文
@yue
2007年論文
@zh-hant
2007年論文
@zh-hk
2007年論文
@zh-mo
2007年論文
@zh-tw
2007年论文
@wuu
2007年论文
@zh
2007年论文
@zh-cn
name
Two-stage folding of HP-35 from ab initio simulations
@en
type
label
Two-stage folding of HP-35 from ab initio simulations
@en
prefLabel
Two-stage folding of HP-35 from ab initio simulations
@en
P2860
P1476
Two-stage folding of HP-35 from ab initio simulations
@en
P2093
Hongxing Lei
P2860
P304
P356
10.1016/J.JMB.2007.04.040
P407
P577
2007-04-20T00:00:00Z