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Understanding the Role of the Master Regulator XYR1 in Trichoderma reesei by Global Transcriptional AnalysisComparative metabolism of cellulose, sophorose and glucose in Trichoderma reesei using high-throughput genomic and proteomic analysesFunctional analysis of the integration host factor site of the σ(54) Pu promoter of Pseudomonas putida by in vivo UV imprinting.The IHF regulon of exponentially growing Pseudomonas putida cells.A practical teaching course in directed protein evolution using the green fluorescent protein as a model.The logic layout of the TOL network of Pseudomonas putida pWW0 plasmid stems from a metabolic amplifier motif (MAM) that optimizes biodegradation of m-xylene.A GFP-lacZ bicistronic reporter system for promoter analysis in environmental gram-negative bacteria.Quantitative, non-disruptive monitoring of transcription in single cells with a broad-host range GFP-luxCDABE dual reporter systemMining logic gates in prokaryotic transcriptional regulation networks.Deciphering the cis-regulatory elements for XYR1 and CRE1 regulators in Trichoderma reesei.Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening.Development of New Modular Genetic Tools for Engineering the Halophilic Archaeon Halobacterium salinarumThe impact of chromatin remodelling on cellulase expression in Trichoderma reesei.Comparative analyses of downstream signal transduction targets modulated after activation of the AT1 receptor by two β-arrestin-biased agonists.Deletion of pH Regulator pac-3 Affects Cellulase and Xylanase Activity during Sugarcane Bagasse Degradation by Neurospora crassaRecent Progress on Systems and Synthetic Biology Approaches to Engineer Fungi As Microbial Cell Factories.Transcription factor levels enable metabolic diversification of single cells of environmental bacteria.The Chromobacterium violaceum ArsR Arsenite Repressor Exerts Tighter Control on Its Cognate Promoter Than the Escherichia coli System.The Aspergillus fumigatus SchASCH9 kinase modulates SakAHOG1 MAP kinase activity and it is essential for virulence.Noise and robustness in prokaryotic regulatory networks.The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms.The private life of environmental bacteria: pollutant biodegradation at the single cell level.High-resolution analysis of the m-xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt-2.The Post-genomic Era of Trichoderma reesei: What's Next?Pre-mRNA splicing is modulated by antifungal drugs in the filamentous fungus Neurospora crassa.The TOL network of Pseudomonas putida mt-2 processes multiple environmental inputs into a narrow response space.Aspergillus fumigatus protein phosphatase PpzA is involved in iron assimilation, secondary metabolite production, and virulence.The Aspergillus fumigatus CrzA Transcription Factor Activates Chitin Synthase Gene Expression during the Caspofungin Paradoxical Effect.Trichoderma reesei CRE1-mediated Carbon Catabolite Repression in Re-sponse to Sophorose Through RNA Sequencing Analysis.The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypesDefining the genome-wide role of CRE1 during carbon catabolite repression in Trichoderma reesei using RNA-Seq analysis.Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2.The regulatory logic of m-xylene biodegradation by Pseudomonas putida mt-2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid.Engineering multicellular logic in bacteria with metabolic wires.Systematic identification of novel regulatory interactions controlling biofilm formation in the bacterium Escherichia coli.Galectin-3 impacts Cryptococcus neoformans infection through direct antifungal effects.Stochasticity of TOL plasmid catabolic promoters sets a bimodal expression regime in Pseudomonas putida mt-2 exposed to m-xylene.Emergent Properties in Complex Synthetic Bacterial Promoters.Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes.Transcriptome-wide survey of gene expression changes and alternative splicing in Trichophyton rubrum in response to undecanoic acid.
P50
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P50
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hulumtues
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wetenschapper
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հետազոտող
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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Rafael Silva-Rocha
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P108
P106
P21
P31
P496
0000-0001-6319-631X