Unified modeling of gene duplication, loss, and coalescence using a locus tree
about
Computational approaches to species phylogeny inference and gene tree reconciliationFast Dating Using Least-Squares Criteria and AlgorithmsPara-allopatry in hybridizing fire-bellied toads (Bombina bombina and B. variegata): Inference from transcriptome-wide coalescence analysesProbabilistic models of eukaryotic evolution: time for integrationHow old is my gene?A Bayesian Supertree Model for Genome-Wide Species Tree ReconstructionPoor fit to the multispecies coalescent is widely detectable in empirical data.Phylogenetic marker development for target enrichment from transcriptome and genome skim data: the pipeline and its application in southern African Oxalis (Oxalidaceae).Efficient exploration of the space of reconciled gene trees.The inference of gene trees with species trees.The effect of single recombination events on coalescent tree height and shape.Toward more accurate ancestral protein genotype-phenotype reconstructions with the use of species tree-aware gene trees.Joint amalgamation of most parsimonious reconciled gene treesAnalysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants.Event inference in multidomain families with phylogenetic reconciliation.Efficient Gene Tree Correction Guided by Genome EvolutionPoMo: An Allele Frequency-Based Approach for Species Tree Estimation.Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees.Using Genomic Location and Coalescent Simulation to Investigate Gene Tree Discordance in Medicago L.Replacing and additive horizontal gene transfer in Streptococcus.Reconciliation feasibility in the presence of gene duplication, loss, and coalescence with multiple individuals per species.TreeFix: statistically informed gene tree error correction using species trees.Genome-scale coestimation of species and gene trees.Extracting conflict-free information from multi-labeled trees.Parsimonious inference of hybridization in the presence of incomplete lineage sorting.Most parsimonious reconciliation in the presence of gene duplication, loss, and deep coalescence using labeled coalescent trees.On the computational complexity of the maximum parsimony reconciliation problem in the duplication-loss-coalescence model.SimPhy: Phylogenomic Simulation of Gene, Locus, and Species Trees.Gene-tree reconciliation with MUL-trees to resolve polyploidy events.Inferring gene duplications, transfers and losses can be done in a discrete framework.Inconsistency of Species Tree Methods under Gene Flow.Gene Tree Discordance Causes Apparent Substitution Rate Variation.Unsorted homology within locus and species trees.Assessing approaches for inferring species trees from multi-copy genes.Evolution of gene neighborhoods within reconciled phylogenies.Reconciliation of gene and species trees.Extensive gene tree discordance and hemiplasy shaped the genomes of North American columnar cacti.STRIDE: Species Tree Root Inference from Gene Duplication Events.Impact of Model Violations on the Inference of Species Boundaries Under the Multispecies.Gene Tree Discordance Can Generate Patterns of Diminishing Convergence over Time.
P2860
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P2860
Unified modeling of gene duplication, loss, and coalescence using a locus tree
description
2012 nî lūn-bûn
@nan
2012年の論文
@ja
2012年論文
@yue
2012年論文
@zh-hant
2012年論文
@zh-hk
2012年論文
@zh-mo
2012年論文
@zh-tw
2012年论文
@wuu
2012年论文
@zh
2012年论文
@zh-cn
name
Unified modeling of gene duplication, loss, and coalescence using a locus tree
@en
Unified modeling of gene duplication, loss, and coalescence using a locus tree
@nl
type
label
Unified modeling of gene duplication, loss, and coalescence using a locus tree
@en
Unified modeling of gene duplication, loss, and coalescence using a locus tree
@nl
prefLabel
Unified modeling of gene duplication, loss, and coalescence using a locus tree
@en
Unified modeling of gene duplication, loss, and coalescence using a locus tree
@nl
P2860
P356
P1433
P1476
Unified modeling of gene duplication, loss, and coalescence using a locus tree
@en
P2093
Matthew D Rasmussen
P2860
P304
P356
10.1101/GR.123901.111
P577
2012-01-23T00:00:00Z