PatMaN: rapid alignment of short sequences to large databases.
about
A simple biophysical model emulates budding yeast chromosome condensationDesigning Efficient Spaced Seeds for SOLiD Read MappingFast mapping of short sequences with mismatches, insertions and deletions using index structuresThe cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration.Stretching the rules: monocentric chromosomes with multiple centromere domainsA survey of best practices for RNA-seq data analysisFinding microRNA targets in plants: current status and perspectivesChromosomal-Level Assembly of the Asian Seabass Genome Using Long Sequence Reads and Multi-layered ScaffoldingHigh-throughput data integration of RNA-miRNA-circRNA reveals novel insights into mechanisms of benzo[a]pyrene-induced carcinogenicityCoLIde: a bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing dataNo ancient DNA damage in Actinobacteria from the Neanderthal boneAn Improved microRNA Annotation of the Canine GenomemiRBase: microRNA Sequences and AnnotationA toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)Cas9-chromatin binding information enables more accurate CRISPR off-target prediction.Analyzing the microRNA Transcriptome in Plants Using Deep Sequencing Data.Genome-wide analysis reveals characteristics of off-target sites bound by the Cas9 endonuclease.Tools for mapping high-throughput sequencing data.A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promotersNoncoding RNA: Current Deep Sequencing Data Analysis Approaches and Challenges.High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA familiesGenome-wide profiling of populus small RNAs.Structural and functional analysis of viral siRNAs.The nuclear and organellar tRNA-derived RNA fragment population in Arabidopsis thaliana is highly dynamicbaySeq: empirical Bayesian methods for identifying differential expression in sequence count dataProfile and functional analysis of small RNAs derived from Aspergillus fumigatus infected with double-stranded RNA mycoviruses.OCaPPI-Db: an oligonucleotide probe database for pathogen identification through hybridization capture.Genomic responses to the socio-sexual environment in male Drosophila melanogaster exposed to conspecific rivals.Next generation sequencing-based analysis of repetitive DNA in the model dioecious [corrected] plant Silene latifoliaComplexity of the microRNA repertoire revealed by next-generation sequencingOptimizing a massive parallel sequencing workflow for quantitative miRNA expression analysis.Annotation of primate miRNAs by high throughput sequencing of small RNA libraries.High Performance Multiple Sequence Alignment System for Pyrosequencing Reads from Multiple Reference Genomes.Differential genome evolution and speciation of Coix lacryma-jobi L. and Coix aquatica Roxb. hybrid guangxi revealed by repetitive sequence analysis and fine karyotypingA single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides.Small RNA analysis in Sindbis virus infected human HEK293 cellsSmall RNA profile in moso bamboo root and leaf obtained by high definition adapters.Global discovery and characterization of small non-coding RNAs in marine microalgae.A non-canonical RNA silencing pathway promotes mRNA degradation in basal FungiExtraordinary transgressive phenotypes of hybrid tomato are influenced by epigenetics and small silencing RNAs.
P2860
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P2860
PatMaN: rapid alignment of short sequences to large databases.
description
2008 nî lūn-bûn
@nan
2008年の論文
@ja
2008年学术文章
@wuu
2008年学术文章
@zh-cn
2008年学术文章
@zh-hans
2008年学术文章
@zh-my
2008年学术文章
@zh-sg
2008年學術文章
@yue
2008年學術文章
@zh
2008年學術文章
@zh-hant
name
PatMaN: rapid alignment of short sequences to large databases.
@en
PatMaN: rapid alignment of short sequences to large databases.
@nl
type
label
PatMaN: rapid alignment of short sequences to large databases.
@en
PatMaN: rapid alignment of short sequences to large databases.
@nl
prefLabel
PatMaN: rapid alignment of short sequences to large databases.
@en
PatMaN: rapid alignment of short sequences to large databases.
@nl
P2093
P2860
P356
P1433
P1476
PatMaN: rapid alignment of short sequences to large databases.
@en
P2093
Kay Prüfer
Michael Dannemann
Richard E Green
Udo Stenzel
P2860
P304
P356
10.1093/BIOINFORMATICS/BTN223
P407
P577
2008-05-08T00:00:00Z