Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.
about
Structural diversity of supercoiled DNA.DNA minicircles clarify the specific role of DNA structure on retroviral integrationβ-Arm flexibility of HU from Staphylococcus aureus dictates the DNA-binding and recognition mechanismProtein/DNA interactions in complex DNA topologies: expect the unexpectedPlectoneme tip bubbles: coupled denaturation and writhing in supercoiled DNA.Analyzing DNA curvature and its impact on the ionic environment: application to molecular dynamics simulations of minicirclesModeling DNA thermodynamics under torsional stress.Simulations of DNA topoisomerase 1B bound to supercoiled DNA reveal changes in the flexibility pattern of the enzyme and a secondary protein-DNA binding siteProbing the elastic limit of DNA bendingElectrostatic braiding and homologous pairing of DNA double helices.Local sensing of global DNA topology: from crossover geometry to type II topoisomerase processivityCooperative kinking at distant sites in mechanically stressed DNA.Molecular dynamics of a DNA Holliday junction: the inverted repeat sequence d(CCGGTACCGG)₄.Twist-induced defects of the P-SSP7 genome revealed by modeling the cryo-EM density.Communication: Origin of the contributions to DNA structure in phages.Refinement of Generalized Born Implicit Solvation Parameters for Nucleic Acids and Their Complexes with Proteins.Structural ensemble and dynamics of toroidal-like DNA shapes in bacteriophage ϕ29 exit cavity.Bullied no more: when and how DNA shoves proteins around.Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulationModeling and Analysis of Intercalant Effects on Circular DNA ConformationProtein/DNA interactions in complex DNA topologies: expect the unexpected.Sequence Affects the Cyclization of DNA Minicircles.Small DNA circles as probes of DNA topology.Single-molecule fluorescence studies on DNA loopingCharacterization of the geometry and topology of DNA pictured as a discrete collection of atoms.Structure and dynamics of DNA loops on nucleosomes studied with atomistic, microsecond-scale molecular dynamics.Influence of the single-strand linker composition on the structural/dynamical properties of a truncated octahedral DNA nano-cage family.Influence of DNA sequence on the structure of minicircles under torsional stress.Atomistic Molecular Dynamics Simulations of DNA Minicircle Topoisomers: A Practical Guide to Setup, Performance, and Analysis.DNA bending propensity in the presence of base mismatches: implications for DNA repair.Simulation of DNA Supercoil RelaxationEnhanced bubble formation in looped short double-stranded DNA.Sequence-dependent response of DNA to torsional stress: a potential biological regulation mechanism.Interference between Triplex and Protein Binding to Distal Sites on Supercoiled DNA.Denaturation and renaturation behaviors of short DNA in a confined space.Decoding the conformation-linked functional properties of nucleic acids by the use of computational tools.How a short double-stranded DNA bends.RELATIONSHIP BETWEEN THE GENOME PACKING IN THE BACTERIOPHAGE CAPSID AND THE KINETICS OF DNA EJECTION
P2860
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P2860
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.
description
2011 nî lūn-bûn
@nan
2011年の論文
@ja
2011年論文
@yue
2011年論文
@zh-hant
2011年論文
@zh-hk
2011年論文
@zh-mo
2011年論文
@zh-tw
2011年论文
@wuu
2011年论文
@zh
2011年论文
@zh-cn
name
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.
@en
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.
@nl
type
label
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.
@en
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.
@nl
prefLabel
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.
@en
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA.
@nl
P2860
P356
P1476
Atomistic simulations reveal bubbles, kinks and wrinkles in supercoiled DNA
@en
P2093
J S Mitchell
P2860
P304
P356
10.1093/NAR/GKQ1312
P407
P577
2011-01-18T00:00:00Z