about
The catfish genome database cBARBEL: an informatic platform for genome biology of ictalurid catfishThe channel catfish genome sequence provides insights into the evolution of scale formation in teleostsA pilot study for channel catfish whole genome sequencing and de novo assembly.RNA-Seq reveals expression signatures of genes involved in oxygen transport, protein synthesis, folding, and degradation in response to heat stress in catfish.Generation and analysis of expressed sequence tags from the ciliate protozoan parasite Ichthyophthirius multifiliisTowards the ictalurid catfish transcriptome: generation and analysis of 31,215 catfish ESTs.A BAC-based physical map of the channel catfish genome.Characterization of a BAC library from channel catfish Ictalurus punctatus: indications of high levels of chromosomal reshuffling among teleost genomes.Quality assessment parameters for EST-derived SNPs from catfish.Comparative analysis of catfish BAC end sequences with the zebrafish genome.Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies.Identification and characterization of full-length cDNAs in channel catfish (Ictalurus punctatus) and blue catfish (Ictalurus furcatus)Generation of genome-scale gene-associated SNPs in catfish for the construction of a high-density SNP arrayDNA barcoding of catfish: species authentication and phylogenetic assessment.Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygoteEffect of nutrient restriction and re-feeding on calpain family genes in skeletal muscle of channel catfish (Ictalurus punctatus)Generation of physical map contig-specific sequences useful for whole genome sequence scaffolding.Development of the catfish 250K SNP array for genome-wide association studies.Second-generation genetic linkage map of catfish and its integration with the BAC-based physical mapConstruction of genetic linkage maps and comparative genome analysis of catfish using gene-associated markersMolecular characterization of complement factor I reveals constitutive expression in channel catfish.Microarray analysis of gene expression in the blue catfish liver reveals early activation of the MHC class I pathway after infection with Edwardsiella ictaluri.Molecular characterization and expression analysis of the channel catfish cathepsin D genes.Identification and characterization of matrix metalloproteinase-13 sequence structure and expression during embryogenesis and infection in channel catfish (Ictalurus punctatus).Pathogen recognition receptors in channel catfish: I. Identification, phylogeny and expression of NOD-like receptors.Molecular responses of ceruloplasmin to Edwardsiella ictaluri infection and iron overload in channel catfish (Ictalurus punctatus).Microfibrillar-associated protein 4 (MFAP4) genes in catfish play a novel role in innate immune responses.Pathogen recognition receptors in channel catfish: II. Identification, phylogeny and expression of retinoic acid-inducible gene I (RIG-I)-like receptors (RLRs).Multiple CC chemokines in channel catfish and blue catfish as revealed by analysis of expressed sequence tags.NOD-like subfamily of the nucleotide-binding domain and leucine-rich repeat containing family receptors and their expression in channel catfish.Structure and expression of transferrin gene of channel catfish, Ictalurus punctatus.Characterization of a mannose-binding lectin from channel catfish (Ictalurus punctatus).Discovery and validation of gene-linked diagnostic SNP markers for assessing hybridization between Largemouth bass (Micropterus salmoides) and Florida bass (M. floridanus).Sequence analysis and expression of a CXC chemokine in resistant and susceptible catfish after infection of Edwardsiella ictaluri.Divergent Toll-like receptors in catfish (Ictalurus punctatus): TLR5S, TLR20, TLR21.The two channel catfish intelectin genes exhibit highly differential patterns of tissue expression and regulation after infection with Edwardsiella ictaluri.Expression analysis of the acute phase response in channel catfish (Ictalurus punctatus) after infection with a Gram-negative bacterium.Gene expression profiling of a fish parasite Ichthyophthirius multifiliis: Insights into development and senescence-associated avirulence.Molecular characterization and differential expression of the myostatin gene in channel catfish (Ictalurus punctatus).Molecular responses of calreticulin genes to iron overload and bacterial challenge in channel catfish (Ictalurus punctatus).
P50
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P50
description
onderzoeker
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name
Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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type
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
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Huseyin Kucuktas
@sl