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Phospho.ELM: a database of phosphorylation sites--update 2008.

Phospho.ELM: a database of phosphorylation sites--update 2008.

http://www.wikidata.org/entity/Q43032227

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A proposed syntax for Minimotif Semantics, version 1 A structure filter for the Eukaryotic Linear Motif Resource.Feedback between p21 and reactive oxygen production is necessary for cell senescence MimoSA: a system for minimotif annotation Phospho3D 2.0: an enhanced database of three-dimensional structures of phosphorylation sites PHOSIDA 2011: the posttranslational modification database Phospho.ELM: a database of phosphorylation sites--update 2011 Functional organization of the S. cerevisiae phosphorylation network ELM: the status of the 2010 eukaryotic linear motif resource The language of SH2 domain interactions defines phosphotyrosine-mediated signal transduction Protein kinase CK2 phosphorylates and activates p21-activated kinase 1 A mitotic phosphorylation feedback network connects Cdk1, Plk1, 53BP1, and Chk2 to inactivate the G(2)/M DNA damage checkpoint Identifying causal genes and dysregulated pathways in complex diseases Systems Analysis of Adaptive Responses to MAP Kinase Pathway Blockade in BRAF Mutant Melanoma.Reproducible Analysis of Post-Translational Modifications in Proteomes--Application to Human Mutations SH2 Domains Recognize Contextual Peptide Sequence Information to Determine Selectivity A tissue-specific atlas of mouse protein phosphorylation and expression Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results NetworKIN: a resource for exploring cellular phosphorylation networks A dynamic view of domain-motif interactions.AMASS: a database for investigating protein structures.MoKCa database--mutations of kinases in cancer.Identification of tumor-associated, MHC class II-restricted phosphopeptides as targets for immunotherapy Improving the performance of protein kinase identification via high dimensional protein-protein interactions and substrate structure data.Estimation and efficient computation of the true probability of recurrence of short linear protein sequence motifs in unrelated proteins.MCAM: multiple clustering analysis methodology for deriving hypotheses and insights from high-throughput proteomic datasets.MicroRNA-140-5p and SMURF1 regulate pulmonary arterial hypertension.Phosphoproteome analysis of isoflurane-protected heart mitochondria: phosphorylation of adenine nucleotide translocator-1 on Tyr194 regulates mitochondrial function.Predicting protein post-translational modifications using meta-analysis of proteome scale data sets.In silico analysis of phosphoproteome data suggests a rich-get-richer process of phosphosite accumulation over evolution.A comprehensive resource for integrating and displaying protein post-translational modifications.Evidence for the concerted evolution between short linear protein motifs and their flanking regions.PhosSNP for systematic analysis of genetic polymorphisms that influence protein phosphorylation.Cooperativity within proximal phosphorylation sites is revealed from large-scale proteomics data.PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationship AMS 3.0: prediction of post-translational modifications.Towards the systematic discovery of signal transduction networks using phosphorylation dynamics data.Machine learning approach to predict protein phosphorylation sites by incorporating evolutionary information.In-depth qualitative and quantitative profiling of tyrosine phosphorylation using a combination of phosphopeptide immunoaffinity purification and stable isotope dimethyl labeling Phosphoproteomics for the masses

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Phospho.ELM: a database of phosphorylation sites--update 2008.

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Phospho.ELM: a database of phosphorylation sites--update 2008.

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Phospho.ELM: a database of phosphorylation sites--update 2008.

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Phospho.ELM: a database of phosphorylation sites--update 2008.

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Phospho.ELM: a database of phosphorylation sites--update 2008.

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Phospho.ELM: a database of phosphorylation sites--update 2008.

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Phospho.ELM: a database of phosphorylation sites--update 2008.

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Nucleic Acids Research

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Phospho.ELM: a database of phosphorylation sites--update 2008.

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Allegra Via

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Cathryn M Gould

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Francesca Diella

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P2860

Immunoaffinity profiling of tyrosine phosphorylation in cancer cells

Large-scale characterization of HeLa cell nuclear phosphoproteins

From genomics to chemical genomics: new developments in KEGG

Phosphoproteome analysis of the human mitotic spindle

Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes

ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

STRING 7--recent developments in the integration and prediction of protein interactions

MINT: the Molecular INTeraction database

Phospho.ELM: a database of experimentally verified phosphorylation sites in eukaryotic proteins

PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.

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10.1093/NAR/GKM772

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36

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phosphorylation

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