about
An atlas of combinatorial transcriptional regulation in mouse and manEstimating mutual information using B-spline functions--an improved similarity measure for analysing gene expression dataThe regulated retrotransposon transcriptome of mammalian cellsTagDust--a program to eliminate artifacts from next generation sequencing data.MetaGeneAlyse: analysis of integrated transcriptional and metabolite data.Chromatin states reveal functional associations for globally defined transcription start sites in four human cell lines.Hidden layers of human small RNAs.Employing conservation of co-expression to improve functional inferenceSDRF2GRAPH: a visualization tool of a spreadsheet-based description of experimental processes.Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite.Methods for analyzing deep sequencing expression data: constructing the human and mouse promoterome with deepCAGE data.MiR-107 and MiR-185 can induce cell cycle arrest in human non small cell lung cancer cell lines.NGSView: an extensible open source editor for next-generation sequencing data.Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries.Core promoter structure and genomic context reflect histone 3 lysine 9 acetylation patterns.MOIRAI: a compact workflow system for CAGE analysis.SAMStat: monitoring biases in next generation sequencing data.Deep-sequencing of human Argonaute-associated small RNAs provides insight into miRNA sorting and reveals Argonaute association with RNA fragments of diverse origin.Unamplified cap analysis of gene expression on a single-molecule sequencer.Early B cell factor 1 regulates adipocyte morphology and lipolysis in white adipose tissue.Linking promoters to functional transcripts in small samples with nanoCAGE and CAGEscan.The short non-coding transcriptome of the protozoan parasite Trypanosoma cruziA comprehensive survey of 3' animal miRNA modification events and a possible role for 3' adenylation in modulating miRNA targeting effectiveness.Conservation and divergence in Toll-like receptor 4-regulated gene expression in primary human versus mouse macrophages.A promoter-level mammalian expression atlasAn atlas of active enhancers across human cell types and tissues.Glycyrrhiza uralensis transcriptome landscape and study of phytochemicals.Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE.The mutual information: detecting and evaluating dependencies between variables.The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line.NanoCAGE analysis of the mouse olfactory epithelium identifies the expression of vomeronasal receptors and of proximal LINE elements.pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patternsNonimmunoglobulin target loci of activation-induced cytidine deaminase (AID) share unique features with immunoglobulin genesAdipose tissue microRNAs as regulators of CCL2 production in human obesityAnalysis of the human monocyte-derived macrophage transcriptome and response to lipopolysaccharide provides new insights into genetic aetiology of inflammatory bowel disease.The FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.Building promoter aware transcriptional regulatory networks using siRNA perturbation and deepCAGE.An integrated expression atlas of miRNAs and their promoters in human and mouse.Molecular networks of DYX1C1 gene show connection to neuronal migration genes and cytoskeletal proteins.Update of the FANTOM web resource: from mammalian transcriptional landscape to its dynamic regulation.
P50
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P50
description
hulumtues
@sq
onderzoeker
@nl
researcher
@en
հետազոտող
@hy
name
Carsten O Daub
@ast
Carsten O Daub
@en
Carsten O Daub
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Carsten O Daub
@nl
Carsten O Daub
@sl
type
label
Carsten O Daub
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Carsten O Daub
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Carsten O Daub
@es
Carsten O Daub
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Carsten O Daub
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Carsten Daub
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prefLabel
Carsten O Daub
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Carsten O Daub
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Carsten O Daub
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Carsten O Daub
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Carsten O Daub
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P1053
A-7436-2010
P106
P1416
P2002
carstendaub
P21
P2456
P31
P3829
P496
0000-0002-3295-8729