Coarse-graining DNA for simulations of DNA nanotechnology.
about
Close encounters with DNAPlectoneme tip bubbles: coupled denaturation and writhing in supercoiled DNA.Structure and conformational dynamics of scaffolded DNA origami nanoparticlesA Coarse-Grained Model of Unstructured Single-Stranded DNA Derived from Atomistic Simulation and Single-Molecule Experiment.cgDNA: a software package for the prediction of sequence-dependent coarse-grain free energies of B-form DNADNA RECOMBINATION. Base triplet stepping by the Rad51/RecA family of recombinases.Physical model for recognition tunnelingBlind predictions of DNA and RNA tweezers experiments with force and torque.Design principles for rapid folding of knotted DNA nanostructuresDe novo reconstruction of DNA origami structures through atomistic molecular dynamics simulationA strand graph semantics for DNA-based computationLong-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulationCondensation and Demixing in Solutions of DNA Nanostars and Their Mixtures.A coarse-grained model for assisting the investigation of structure and dynamics of large nucleic acids by ion mobility spectrometry-mass spectrometry.A coarse-grained DNA model for the prediction of current signals in DNA translocation experiments.Platinum-Based Drugs and DNA Interactions Studied by Single-Molecule and Bulk Measurements.DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization.Prediction of solvent-induced morphological changes of polyelectrolyte diblock copolymer micelles.Substrate-assisted 2D DNA lattices and algorithmic lattices from single-stranded tiles.DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size.Designing the structure and folding pathway of modular topological bionanostructures.Lattice model of oligonucleotide hybridization in solution. II. Specificity and cooperativity.Effect of backbone chemistry on hybridization thermodynamics of oligonucleic acids: a coarse-grained molecular dynamics simulation study.A comparison between parallelization approaches in molecular dynamics simulations on GPUs.Small-angle neutron scattering and molecular dynamics structural study of gelling DNA nanostars.Bottom-up coarse-grained models that accurately describe the structure, pressure, and compressibility of molecular liquids.Characterizing the bending and flexibility induced by bulges in DNA duplexes.Switching bonds in a DNA gel: an all-DNA vitrimer.Decoding the conformation-linked functional properties of nucleic acids by the use of computational tools.Coarse-grained modeling of DNA oligomer hybridization: length, sequence, and salt effects.The importance of thermodynamics for molecular systems, and the importance of molecular systems for thermodynamics.Numerical Evidence for Nucleated Self-Assembly of DNA Brick StructuresProgress in molecular modelling of DNA materialsThe temperature dependence of the helical twist of DNA
P2860
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P2860
Coarse-graining DNA for simulations of DNA nanotechnology.
description
2013 nî lūn-bûn
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2013年の論文
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2013年学术文章
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2013年学术文章
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2013年学术文章
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name
Coarse-graining DNA for simulations of DNA nanotechnology.
@en
Coarse-graining DNA for simulations of DNA nanotechnology.
@nl
type
label
Coarse-graining DNA for simulations of DNA nanotechnology.
@en
Coarse-graining DNA for simulations of DNA nanotechnology.
@nl
prefLabel
Coarse-graining DNA for simulations of DNA nanotechnology.
@en
Coarse-graining DNA for simulations of DNA nanotechnology.
@nl
P2093
P2860
P50
P356
P1476
Coarse-graining DNA for simulations of DNA nanotechnology
@en
P2093
Benedict E K Snodin
Christian Matek
John S Schreck
Lorenzo Rovigatti
Ryan M Harrison
William P J Smith
P2860
P304
20395-20414
P356
10.1039/C3CP53545B
P407
P577
2013-10-11T00:00:00Z