Efficient formulation of the stochastic simulation algorithm for chemically reacting systems.
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Intrinsic noise analyzer: a software package for the exploration of stochastic biochemical kinetics using the system size expansionReaction factoring and bipartite update graphs accelerate the Gillespie Algorithm for large-scale biochemical systemsMEDYAN: Mechanochemical Simulations of Contraction and Polarity Alignment in Actomyosin NetworksAccurate hybrid stochastic simulation of a system of coupled chemical or biochemical reactionsA new class of highly efficient exact stochastic simulation algorithms for chemical reaction networksA partial-propensity variant of the composition-rejection stochastic simulation algorithm for chemical reaction networksA constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networksRecycling random numbers in the stochastic simulation algorithmExact stochastic simulation of coupled chemical reactions with delaysA partial-propensity formulation of the stochastic simulation algorithm for chemical reaction networks with delaysThe role of compensatory mutations in the emergence of drug resistanceTemperature control of fimbriation circuit switch in uropathogenic Escherichia coli: quantitative analysis via automated model abstractionExact hybrid particle/population simulation of rule-based models of biochemical systemsA Hybrid of the Chemical Master Equation and the Gillespie Algorithm for Efficient Stochastic Simulations of Sub-NetworksStochastic Simulation Service: Bridging the Gap between the Computational Expert and the BiologistLazy Updating of hubs can enable more realistic models by speeding up stochastic simulationsSTEPS: efficient simulation of stochastic reaction-diffusion models in realistic morphologiesStochastic chemical kinetics : A review of the modelling and simulation approachesInformation transfer in signaling pathways: a study using coupled simulated and experimental dataMultiscale Hy3S: hybrid stochastic simulation for supercomputers.Optimal enumeration of state space of finitely buffered stochastic molecular networks and exact computation of steady state landscape probability.FERN - a Java framework for stochastic simulation and evaluation of reaction networks.Model aggregation: a building-block approach to creating large macromolecular regulatory networks.Kinetic modeling of biological systems.The diffusive finite state projection algorithm for efficient simulation of the stochastic reaction-diffusion master equation.Solution of Chemical Master Equations for Nonlinear Stochastic Reaction NetworksModeling and simulation of aggregation of membrane protein LAT with molecular variability in the number of binding sites for cytosolic Grb2-SOS1-Grb2.Accelerating the Gillespie τ-Leaping Method using graphics processing units.Multiscale Models of Antibiotic Probiotics.Model-driven designs of an oscillating gene network.Accelerating the Gillespie Exact Stochastic Simulation Algorithm using hybrid parallel execution on graphics processing units.Efficient step size selection for the tau-leaping simulation method.A higher-order numerical framework for stochastic simulation of chemical reaction systems.Stochastic simulation in systems biology.Mathematical models in biology: from molecules to life.An accelerated algorithm for discrete stochastic simulation of reaction-diffusion systems using gradient-based diffusion and tau-leaping.Efficient stochastic simulation of reaction-diffusion processes via direct compilationStochKit2: software for discrete stochastic simulation of biochemical systems with eventsWeighted next reaction method and parameter selection for efficient simulation of rare events in biochemical reaction systemsProtein distributions from a stochastic model of the lac operon of E. coli with DNA looping: analytical solution and comparison with experiments.
P2860
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P2860
Efficient formulation of the stochastic simulation algorithm for chemically reacting systems.
description
2004 nî lūn-bûn
@nan
2004年の論文
@ja
2004年学术文章
@wuu
2004年学术文章
@zh-cn
2004年学术文章
@zh-hans
2004年学术文章
@zh-my
2004年学术文章
@zh-sg
2004年學術文章
@yue
2004年學術文章
@zh
2004年學術文章
@zh-hant
name
Efficient formulation of the s ...... r chemically reacting systems.
@en
Efficient formulation of the s ...... r chemically reacting systems.
@nl
type
label
Efficient formulation of the s ...... r chemically reacting systems.
@en
Efficient formulation of the s ...... r chemically reacting systems.
@nl
prefLabel
Efficient formulation of the s ...... r chemically reacting systems.
@en
Efficient formulation of the s ...... r chemically reacting systems.
@nl
P2093
P2860
P356
P1476
Efficient formulation of the s ...... r chemically reacting systems.
@en
P2093
P2860
P304
P356
10.1063/1.1778376
P407
P577
2004-09-01T00:00:00Z