Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
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Staphylococcal protein A: unfolding pathways, unfolded states, and differences between the B and E domainsIs the molten globule a third phase of proteins?Spontaneous fibril formation by polyalanines; discontinuous molecular dynamics simulationsEvidence that the Bacillus subtilis SpoIIGA protein is a novel type of signal-transducing aspartic proteaseLigand Docking to Intermediate and Close-To-Bound Conformers Generated by an Elastic Network Model Based Algorithm for Highly Flexible ProteinsProtein structure prediction by global optimization of a potential energy function.Ab initio protein structure prediction using physicochemical potentials and a simplified off-lattice model.Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure.Evaluating CASP4 predictions with physical energy functions.TOUCHSTONE II: a new approach to ab initio protein structure predictionEffect of chain connectivity on the structure of Lennard-Jones liquid and its implicationon statistical potentials for protein folding.Lattice model simulation of interchain protein interactions and the folding dynamics and dimerization of the GCN4 Leucine zipper.Enhancement of beta-sheet assembly by cooperative hydrogen bonds potentialCoarse-grained force field: general folding theory.Protein structure prediction force fields: parametrization with quasi-newtonian dynamics.Distance geometry generates native-like folds for small helical proteins using the consensus distances of predicted protein structures.Accuracy of side-chain prediction upon near-native protein backbones generated by Ab initio folding methods.Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements.PRIMO/PRIMONA: a coarse-grained model for proteins and nucleic acids that preserves near-atomistic accuracy.Mechanism of formation of the C-terminal beta-hairpin of the B3 domain of the immunoglobulin-binding protein G from Streptococcus. IV. Implication for the mechanism of folding of the parent protein.Towards understanding the mechanisms of molecular recognition by computer simulations of ligand-protein interactions.Flow-induced beta-hairpin folding of the glycoprotein Ibalpha beta-switchalpha-helix formation: discontinuous molecular dynamics on an intermediate-resolution protein model.Computer simulations of de novo designed helical proteins.De novo simulations of the folding thermodynamics of the GCN4 leucine zipper.Numerical study of the entropy loss of dimerization and the folding thermodynamics of the GCN4 leucine zipper.Molecular mechanism for stabilizing a short helical peptide studied by generalized-ensemble simulations with explicit solvent.The structural basis for biphasic kinetics in the folding of the WW domain from a formin-binding protein: lessons for protein design?Toward temperature-dependent coarse-grained potentials of side-chain interactions for protein folding simulations. II. Molecular dynamics study of pairs of different types of interactions in water at various temperaturesCoupling the folding of homologous proteins.Are proteins ideal mixtures of amino acids? Analysis of energy parameter setsPrediction of polyelectrolyte polypeptide structures using Monte Carlo conformational search methods with implicit solvation modeling.Improved genetic algorithm for the protein folding problem by use of a Cartesian combination operator.Ideal architecture of residue packing and its observation in protein structures.Scoring functions in protein folding and designExploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.Molecular dynamics with the united-residue model of polypeptide chains. I. Lagrange equations of motion and tests of numerical stability in the microcanonical mode.Multiscale coarse-graining and structural correlations: connections to liquid-state theory.Energy-based de novo protein folding by conformational space annealing and an off-lattice united-residue force field: application to the 10-55 fragment of staphylococcal protein A and to apo calbindin D9K.An iterative method for extracting energy-like quantities from protein structures.
P2860
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P2860
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
description
1994 nî lūn-bûn
@nan
1994年の論文
@ja
1994年学术文章
@wuu
1994年学术文章
@zh
1994年学术文章
@zh-cn
1994年学术文章
@zh-hans
1994年学术文章
@zh-my
1994年学术文章
@zh-sg
1994年學術文章
@yue
1994年學術文章
@zh-hant
name
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
@en
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
@nl
type
label
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
@en
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
@nl
prefLabel
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
@en
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
@nl
P356
P1433
P1476
Monte Carlo simulations of protein folding. I. Lattice model and interaction scheme.
@en
P2093
Kolinski A
Skolnick J
P304
P356
10.1002/PROT.340180405
P407
P577
1994-04-01T00:00:00Z