Comprehensive analysis of hydrogen bonds in regulatory protein DNA-complexes: in search of common principles.
about
From sequence to structure and back again: approaches for predicting protein-DNA bindingSeqX: a tool to detect, analyze and visualize residue co-locations in protein and nucleic acid structuresStructural basis for recognition of the matrix attachment region of DNA by transcription factor SATB1Contribution of Asparagine Residues to the Stabilization of a Proteinaceous Antigen-Antibody Complex, HyHEL-10-Hen Egg White LysozymeComputational structural analysis: multiple proteins bound to DNADifferent combinations of atomic interactions predict protein-small molecule and protein-DNA/RNA affinities with similar accuracyAmino acid-base interactions: a three-dimensional analysis of protein-DNA interactions at an atomic levelClassifying RNA-binding proteins based on electrostatic propertiesPrediction of mono- and di-nucleotide-specific DNA-binding sites in proteins using neural networksTy5 gag mutations increase retrotransposition and suggest a role for hydrogen bonding in the function of the nucleocapsid zinc finger.Sequence preference for BI/BII conformations in DNA: MD and crystal structure data analysis.Energetics of the protein-DNA-water interaction.Deciphering the mechanism of thermodynamic accommodation of telomeric oligonucleotide sequences by the Schizosaccharomyces pombe protection of telomeres 1 (Pot1pN) protein.Prediction of TF target sites based on atomistic models of protein-DNA complexes.Small local variations in B-form DNA lead to a large variety of global geometries which can accommodate most DNA-binding protein motifsThe Protein-DNA Interface databaseRegion 2.5 of the Escherichia coli RNA polymerase sigma70 subunit is responsible for the recognition of the 'extended-10' motif at promotersNon-independence of Mnt repressor-operator interaction determined by a new quantitative multiple fluorescence relative affinity (QuMFRA) assay.Reprogrammable recognition codes in bicoid homeodomain-DNA interaction.Prediction of DNA-binding propensity of proteins by the ball-histogram method using automatic template searchRe-visiting protein-centric two-tier classification of existing DNA-protein complexes.Probing the TRAP-RNA interaction with nucleoside analogs.RNA base-amino acid interaction strengths derived from structures and sequences.Is there a code for protein-DNA recognition? Probab(ilistical)ly. . .Prediction of DNA-binding residues from sequence.5-Thiocyanato-2'-deoxyuridine as a possible radiosensitizer: electron-induced formation of uracil-C5-thiyl radical and its dimerization.Plasticity in Repressor-DNA Interactions Neutralizes Loss of Symmetry in Bipartite Operators.Probing the assembly of transcription initiation complexes through changes in sigmaN protease sensitivity.An improved hydrogen bond potential: impact on medium resolution protein structures.Experimentally based contact energies decode interactions responsible for protein-DNA affinity and the role of molecular waters at the binding interfaceNegative electrostatic surface potential of protein sites specific for anionic ligandsBioinformatic analysis of the protein/DNA interface.DNA recognition by synthetic constructs.Exocyclic groups in the minor groove influence the backbone conformation of DNA.Characterization of a minimal type of promoter containing the -10 element and a guanine at the -14 or -13 position in mycobacteria.Bioactive clusters promoting cell penetration and nucleic acid complexation for drug and gene delivery applications: from designed to self-assembled and responsive systems.Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide-protein complexes.Direct Comparison of Amino Acid and Salt Interactions with Double-Stranded and Single-Stranded DNA from Explicit-Solvent Molecular Dynamics Simulations.Correlating protein footprinting with mutational analysis in the bacterial transcription factor sigma54 (sigmaN).Protein and drug interactions in the minor groove of DNA.
P2860
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P2860
Comprehensive analysis of hydrogen bonds in regulatory protein DNA-complexes: in search of common principles.
description
1995 nî lūn-bûn
@nan
1995年の論文
@ja
1995年学术文章
@wuu
1995年学术文章
@zh-cn
1995年学术文章
@zh-hans
1995年学术文章
@zh-my
1995年学术文章
@zh-sg
1995年學術文章
@yue
1995年學術文章
@zh
1995年學術文章
@zh-hant
name
Comprehensive analysis of hydr ...... n search of common principles.
@en
Comprehensive analysis of hydr ...... n search of common principles.
@nl
type
label
Comprehensive analysis of hydr ...... n search of common principles.
@en
Comprehensive analysis of hydr ...... n search of common principles.
@nl
prefLabel
Comprehensive analysis of hydr ...... n search of common principles.
@en
Comprehensive analysis of hydr ...... n search of common principles.
@nl
P2093
P356
P1476
Comprehensive analysis of hydr ...... n search of common principles.
@en
P2093
Mandel-Gutfreund Y
Margalit H
Schueler O
P304
P356
10.1006/JMBI.1995.0559
P407
P577
1995-10-01T00:00:00Z